SCRG1 Gene
protein-coding GIFtS : 43
GCID: GC04 M174309
stimulator of chondrogenesis 1
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Aliasesfor SCRG1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Stimulator Of Chondrogenesis 1 1 2 Scrapie Responsive Protein 12 SCRG-11 2 Scrapie-Responsive Protein 12 Scrapie-Responsive Gene 1 Protein2 3 ScRG-13 Scrapie Responsive Gene 12
Export aliases for SCRG1 gene to outside databases Previous GC identifers: GC04M175229 GC04M174847 GC04M175005 GC04M174684 GC04M174545 GC04M170057
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Summariesfor SCRG1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SCRG1 : Scrapie-responsive gene 1 is associated with neurodegenerative changes observed in transmissible spongiform encephalopathies. It may play a role in host response to prion-associated infections. The scrapie responsive protein 1 may be partly included in the membrane or secreted by the cells due to its hydrophobic N-terminus. (provided by RefSeq, Jul 2008)
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Genomic Viewsfor SCRG1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_016354.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SCRG1 gene promoter: TBP AML1a FOXD3 STAT5A POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) POU3F2 GATA-2 HEN1 TFIID Other transcription factors Search SABiosciences Chromatin IP Primers for SCRG1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SCRG1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q34.1 Ensembl cytogenetic band: 4q34.1 HGNC cytogenetic band: 4q34.1 SCRG1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M174309: view genomic region
(about GC identifiers )
Start:
174,309,299 bp from pter
End:
174,327,531 bp from pter
Size:
18,233 bases
Orientation:
minus strand
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Proteinsfor SCRG1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SCRG1_HUMAN, O75711 (See
protein sequence )Recommended Name: Scrapie-responsive protein 1 precursor Size : 98 amino acids; 11081 Da
Subcellular location : Secreted (Probable)Explore the universe of human proteins at neXtProt for SCRG1: NX_O75711 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O75711 SCRG1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_009212.1 ENSEMBL proteins: ENSP00000296506 ENSP00000425404 Human Recombinant Protein Products for SCRG1: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
SCRG1 for ontologies About GeneDecksing SCRG1 Antibody Products: Assay Products for SCRG1:
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Protein
Domains / Familiesfor SCRG1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section ProtoNet protein and cluster: O75711
UniProtKB/Swiss-Prot: SCRG1_HUMAN, O75711 Similarity : Belongs to the SCRG1 family
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Functionfor SCRG1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Phenotypes: 1 MGI phenotypic allele for Scrg1 (no phenotypes)
SCRG1 for phenotypes About GeneDecksing Animal Models: Mouse knock-out Scrg1 tm1Lex for SCRG1Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SCRG1 (NM_007281 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SCRG1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SCRG1
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Pathways & Interactionsfor SCRG1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SCRG1 Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007399 nervous system development
TAS 9660755
SCRG1 for ontologies About GeneDecksing
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Drugs & Compoundsfor SCRG1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SCRG1 Search CenterWatch for drugs/clinical trials and news about SCRG1
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Transcriptsfor SCRG1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SCRG1 gene: NM_007281.2 Unigene Cluster for SCRG1:
Stimulator of chondrogenesis 1 Hs.7122 [show with all ESTs ] Unigene Representative Sequence: BM548320 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000296506 (uc003ite.3 ) ENST00000512188 (uc003itf.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SCRG1 (NM_007281 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SCRG1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SCRG1
Additional cDNA sequence: AJ224677.1 AK312146.1 AY359040.1 BC017583.2 CR542142.1
10 DOTS entries : DT.216553 DT.121275342
DT.40131087 DT.97842749 DT.101972998 DT.121275353 DT.439675 DT.95145060 DT.101957193 DT.95124060 24/118 AceView cDNA sequences (see all 118 ):
AI129874 AI094019 AA393569 AI129876 AA774444 AI435359 AA444139 AV709002 AV728636 AA127018 CR542142 CA412616 AI431623 AI018515 CB152765 BQ574326 BE218367 AI005196 AI588970 AI718370 AI129258 BQ180896 AA400285 D79872 GeneLoc Exon Structure
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Expression for SCRG1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SCRG1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATTCTGGAGAbout this image SCRG1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
4 LifeMap In Vivo Development Anatomical Compartments/Cells Tissue Anatomical Compartment
Cell Category (developmental path) Heart Atrioventricular Node Atrioventricular Node Cells Myocardium Bone Autopod Long Bone Bone Bone Zeugopod Epiphyseal End Bone Bone Zeugopod Growth Plate Bone Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
Stem Cell Differentiation: 10/16 LifeMap Cells (see all 16 ) Name Category PureStem™ myogenic progenitor Z11 (Embryonic Progenitor Cell)Heart, Myocardium, Smooth Muscle PureStem™ mesenchymal progenitor 7SMOO32 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage PureStem™ mesenchymal progenitor 4D20.8 (Embryonic Progenitor Cell)Lateral Plate Mesoderm, Neural Crest PureStem™ progenitor W10 (Embryonic Progenitor Cell)N2/LSB/S/F8-induced cells (Generation of midbra... )Beating cell clusters (Spontaneous differen... )HyStem+TGF?3+GDF5-induced SK11 cells (HyStem+TGF?3+GDF5 in... )Bone, Cartilage HyStem+TGF?3+GDF5-induced SM30 cells (HyStem+TGF?3+GDF5 in... )Bone, Cartilage HyStem+BMP4-induced SM30 cells (HyStem+BMP4 inductio... )Adipose, Bone, Cartilage HyStem+TGF?3+GDF5-induced 7SMOO32 cells (HyStem+TGF?3+GDF5 in... )Bone, Cartilage
See SCRG1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SCRG1 SOURCE GeneReport for Unigene cluster: Hs.7122 UniProtKB/Swiss-Prot: SCRG1_HUMAN, O75711 Tissue specificity : Expressed abundantly in the central nervous system of adult, but not at all in fetal brain. Highlevels of SCRG1 transcripts are also observed in testis and aorta SABiosciences Custom PCR Arrays for SCRG1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SCRG1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SCRG1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SCRG1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SCRG1
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Orthologsfor SCRG1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for SCRG1 gene from 3/9 species (see all 9 ) About this table
ENSEMBL Gene Tree for SCRG1 (if available)TreeFam Gene Tree for SCRG1 (if available)
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Paralogsfor SCRG1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor SCRG1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 4 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SCRG1 (174309299 - 174327531 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SCRG1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SCRG1
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Disorders
/ Diseasesfor SCRG1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SCRG1 for disorders About GeneDecksing
OMIM gene information: 603163
OMIM disorders : --3 diseases for SCRG1 : About MalaCards scrapie periodontitis neuronitis 1 disease from the University of Copenhagen DISEASES database for SCRG1 :Scrapie Export disorders for SCRG1 gene to outside databases
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Publicationsfor SCRG1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SCRG1 gene integrated from 9 sources : (articles sorted by number of sources associating them with SCRG1) Utopia : connect your pdf to the dynamic world of online information
Characterization of the human analogue of a scrapie-responsive gene. (PubMed id 9660755) 1 , 2 , 3, 9 Dron M.... Tovey M.G. (1998) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Gene expression in scrapie. Cloning of a new scrapie-responsive gene and the identification of increased levels of seven other mRNA transcripts. (PubMed id 9516475) 1 , 3 Dandoy-Dron F....Dron M. (1998) A predominantly articular cartilage-associated gene, SCRG1, is induced by glucocorticoid and stimulates chondrogenesis in vitro. (PubMed id 16188469) 1 Ochi K....Tuan R.S. (2006) Comparative proteomic analysis of intra- and interindividual variation in human cerebrospinal fluid. (PubMed id 16199891) 1 Hu Y....Holtzman D.M. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Mouse scrapie responsive gene 1 (Scrg1): genomic organization, physical linkage to sap30, genetic mapping on chromosome 8, and expression in neuronal primary cell cultures. (PubMed id 11087671) 9 Dron M....Dandoy-Dron F. (2000) Comprehensive gene expression analysis in human periodontal ligaments of the mandibular third molars performing vertical movement and the maxillary second premolars with occlusal contact. (PubMed id 18199074) 9 Suda N. (2008)
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External Searches for SCRG1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SCRG1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SCRG1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SCRG1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SCRG1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SCRG1 gene: Search GeneIP for patents involving SCRG1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SCRG1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SCRG1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SCRG1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SCRG1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SCRG1 OriGene 3'-UTR Clone for SCRG1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SCRG1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SCRG1 OriGene Custom Protein Services for SCRG1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SCRG1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SCRG1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SCRG1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SCRG1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SCRG1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SCRG1
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SCRG1 Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SCRG1
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