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Aliases for SCOCP1 Gene

Aliases for SCOCP1 Gene

  • Short Coiled-Coil Protein Pseudogene 1 2 3 5
  • Short Coiled Coil Protein Pseudogene 1 2

External Ids for SCOCP1 Gene

Previous GeneCards Identifiers for SCOCP1 Gene

  • GC14U900023
  • GC14P060625

Summaries for SCOCP1 Gene

GeneCards Summary for SCOCP1 Gene

SCOCP1 (Short Coiled-Coil Protein Pseudogene 1) is a Pseudogene.

Additional gene information for SCOCP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCOCP1 Gene

Genomics for SCOCP1 Gene

Regulatory Elements for SCOCP1 Gene

Enhancers for SCOCP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H060090 1.6 Ensembl ENCODE dbSUPER 14 -65.3 -65257 6 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 DHRS7 L3HYPDH SCOCP1 PCNX4 TRMT5 GC14P060140
GH14H059160 1.5 FANTOM5 Ensembl ENCODE 13.8 -997.2 -997152 1 PKNOX1 FOXA2 ARID4B DMAP1 ATF7 RUNX3 SP5 PPARG KAT8 NFIL3 L3HYPDH KIAA0586 SCOCP1 GPR135 PCNX4 DAAM1 TIMM9 PPIAP5 AKR1B1P5
GH14H060720 1.4 FANTOM5 ENCODE 12.2 +563.8 563755 4 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B ZNF207 FOS TRMT5 MNAT1 SCOCP1 RTN1 PPM1A GC14M060376 SIX4
GH14H060330 1.4 Ensembl ENCODE dbSUPER 11.2 +172.7 172691 1 PKNOX1 NFIB ARID4B SIN3A DMAP1 BATF RAD21 YY1 ZNF143 ATF7 L3HYPDH C14orf39 PCNX4 SCOCP1 LOC101927702 PPM1A TRMT5 GC14P060353 LINC02322
GH14H060161 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.9 2931 1 USF2 MAX YY1 JUND ZNF366 ZBTB48 SCRT2 KLF9 HNF4A FOS DHRS7 SCOCP1 GC14P060159
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCOCP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCOCP1 Gene

Chromosome:
14
Start:
60,158,976 bp from pter
End:
60,161,425 bp from pter
Size:
2,450 bases
Orientation:
Plus strand

Genomic View for SCOCP1 Gene

Genes around SCOCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCOCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCOCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCOCP1 Gene

Proteins for SCOCP1 Gene

Post-translational modifications for SCOCP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCOCP1 Gene

Domains & Families for SCOCP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCOCP1 Gene

Function for SCOCP1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCOCP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCOCP1 Gene

Localization for SCOCP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCOCP1 Gene

Pathways & Interactions for SCOCP1 Gene

SuperPathways for SCOCP1 Gene

No Data Available

Interacting Proteins for SCOCP1 Gene

Gene Ontology (GO) - Biological Process for SCOCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCOCP1 Gene

Drugs & Compounds for SCOCP1 Gene

No Compound Related Data Available

Transcripts for SCOCP1 Gene

mRNA/cDNA for SCOCP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCOCP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SCOCP1 Gene

No ASD Table

Relevant External Links for SCOCP1 Gene

GeneLoc Exon Structure for
SCOCP1
ECgene alternative splicing isoforms for
SCOCP1

Expression for SCOCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCOCP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCOCP1 Gene:

SCOCP1
genes like me logo Genes that share expression patterns with SCOCP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCOCP1 Gene

Orthologs for SCOCP1 Gene

Evolution for SCOCP1 Gene

ENSEMBL:
Gene Tree for SCOCP1 (if available)
TreeFam:
Gene Tree for SCOCP1 (if available)

No data available for Orthologs for SCOCP1 Gene

Paralogs for SCOCP1 Gene

No data available for Paralogs for SCOCP1 Gene

Variants for SCOCP1 Gene

Relevant External Links for SCOCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCOCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCOCP1 Gene

Disorders for SCOCP1 Gene

No disorders were found for SCOCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCOCP1 Gene

Publications for SCOCP1 Gene

No publications were found for SCOCP1 Gene.

Products for SCOCP1 Gene

Sources for SCOCP1 Gene

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