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Aliases for SCOCP1 Gene

Aliases for SCOCP1 Gene

  • Short Coiled-Coil Protein Pseudogene 1 2 3 5
  • Short Coiled Coil Protein Pseudogene 1 2

External Ids for SCOCP1 Gene

Previous GeneCards Identifiers for SCOCP1 Gene

  • GC14U900023
  • GC14P060625

Summaries for SCOCP1 Gene

GeneCards Summary for SCOCP1 Gene

SCOCP1 (Short Coiled-Coil Protein Pseudogene 1) is a Pseudogene.

Additional gene information for SCOCP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCOCP1 Gene

Genomics for SCOCP1 Gene

GeneHancer (GH) Regulatory Elements for SCOCP1 Gene

Promoters and enhancers for SCOCP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I060160 Enhancer 0.4 Ensembl dbSUPER 550.8 +1.8 1825 0.4 GC14P060159 SCOCP1 DHRS7 PCNX4
GH14I060158 Enhancer 0.2 dbSUPER 550.8 +0.3 282 1.9 GC14P060159 SCOCP1 DHRS7 PCNX4 PPM1A LOC101927702
GH14I060090 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 11.5 -65.3 -65257 6.2 HDGF FOXA2 PKNOX1 MLX ARID4B NEUROD1 SIN3A DMAP1 IRF4 YY1 PCNX4 LOC105370524 DHRS7 L3HYPDH SCOCP1 TRMT5 GC14P060140
GH14I060720 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 12.2 +563.8 563755 4.6 PKNOX1 CLOCK FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B POLR2B GC14M060376 SIX4 TRMT5 MNAT1 SCOCP1 RTN1 PPM1A
GH14I060330 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.2 +172.7 172691 1.7 PKNOX1 CLOCK SMAD1 NFIB ARID4B SIN3A DMAP1 BATF KLF5 IRF4 L3HYPDH C14orf39 PCNX4 SCOCP1 LOC101927702 PPM1A TRMT5 GC14P060353 LINC02322
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCOCP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCOCP1 Gene

Genomic Locations for SCOCP1 Gene
chr14:60,158,976-60,161,425
(GRCh38/hg38)
Size:
2,450 bases
Orientation:
Plus strand
chr14:60,625,677-60,628,143
(GRCh37/hg19)

Genomic View for SCOCP1 Gene

Genes around SCOCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCOCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCOCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCOCP1 Gene

Proteins for SCOCP1 Gene

Post-translational modifications for SCOCP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCOCP1 Gene

Domains & Families for SCOCP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCOCP1 Gene

Function for SCOCP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCOCP1 Gene

Localization for SCOCP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCOCP1 Gene

Pathways & Interactions for SCOCP1 Gene

SuperPathways for SCOCP1 Gene

No Data Available

Interacting Proteins for SCOCP1 Gene

Gene Ontology (GO) - Biological Process for SCOCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCOCP1 Gene

Drugs & Compounds for SCOCP1 Gene

No Compound Related Data Available

Transcripts for SCOCP1 Gene

mRNA/cDNA for SCOCP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCOCP1 Gene

No ASD Table

Relevant External Links for SCOCP1 Gene

GeneLoc Exon Structure for
SCOCP1
ECgene alternative splicing isoforms for
SCOCP1

Expression for SCOCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCOCP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCOCP1 Gene:

SCOCP1
genes like me logo Genes that share expression patterns with SCOCP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCOCP1 Gene

Orthologs for SCOCP1 Gene

Evolution for SCOCP1 Gene

ENSEMBL:
Gene Tree for SCOCP1 (if available)
TreeFam:
Gene Tree for SCOCP1 (if available)

No data available for Orthologs for SCOCP1 Gene

Paralogs for SCOCP1 Gene

No data available for Paralogs for SCOCP1 Gene

Variants for SCOCP1 Gene

Additional Variant Information for SCOCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCOCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCOCP1 Gene

Disorders for SCOCP1 Gene

No disorders were found for SCOCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCOCP1 Gene

Publications for SCOCP1 Gene

No publications were found for SCOCP1 Gene.

Products for SCOCP1 Gene

Sources for SCOCP1 Gene

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