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Aliases for SCLY Gene

Aliases for SCLY Gene

  • Selenocysteine Lyase 2 3
  • SCL 3 4 6
  • EC 4.4.1.16 4 63
  • HSCL 3 4
  • Putative Selenocysteine Lyase 2

External Ids for SCLY Gene

Previous GeneCards Identifiers for SCLY Gene

  • GC02P236925
  • GC02P237558
  • GC02P238985
  • GC02P239256
  • GC02P238751
  • GC02P238634
  • GC02P230761

Summaries for SCLY Gene

Entrez Gene Summary for SCLY Gene

  • Selenocysteine lyase (SCLY; EC 4.4.1.16) catalyzes the pyridoxal 5-prime phosphate-dependent conversion of L-selenocysteine to L-alanine and elemental selenium (Mihara et al., 2000 [PubMed 10692412]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SCLY Gene

SCLY (Selenocysteine Lyase) is a Protein Coding gene. Among its related pathways are Metabolism and Selenium Metabolism and Selenoproteins. GO annotations related to this gene include pyridoxal phosphate binding and selenocysteine lyase activity. An important paralog of this gene is ENSG00000272897.

UniProtKB/Swiss-Prot for SCLY Gene

  • Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCLY Gene

Genomics for SCLY Gene

Regulatory Elements for SCLY Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SCLY Gene

Start:
238,060,889 bp from pter
End:
238,099,413 bp from pter
Size:
38,525 bases
Orientation:
Plus strand

Genomic View for SCLY Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCLY Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCLY Gene

Proteins for SCLY Gene

  • Protein details for SCLY Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96I15-SCLY_HUMAN
    Recommended name:
    Selenocysteine lyase
    Protein Accession:
    Q96I15
    Secondary Accessions:
    • B9A068
    • J3KN06
    • Q53SN1
    • Q53SN8
    • Q7L670
    • Q9NVT7
    • Q9NZR7

    Protein attributes for SCLY Gene

    Size:
    445 amino acids
    Molecular mass:
    48149 Da
    Cofactor:
    Name=pyridoxal 5-phosphate; Xref=ChEBI:CHEBI:597326;
    Quaternary structure:
    • Homodimer.
    SequenceCaution:
    • Sequence=BAA91659.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SCLY Gene

    Alternative splice isoforms for SCLY Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCLY Gene

Proteomics data for SCLY Gene at MOPED

Selected DME Specific Peptides for SCLY Gene

Post-translational modifications for SCLY Gene

  • Ubiquitination at Lys307 and Lys341
  • Modification sites at PhosphoSitePlus

Domains for SCLY Gene

Suggested Antigen Peptide Sequences for SCLY Gene

Graphical View of Domain Structure for InterPro Entry

Q96I15

UniProtKB/Swiss-Prot:

SCLY_HUMAN :
  • Q96I15
Family:
  • Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
genes like me logo Genes that share domains with SCLY: view

No data available for Gene Families for SCLY Gene

Function for SCLY Gene

Molecular function for SCLY Gene

UniProtKB/Swiss-Prot CatalyticActivity: L-selenocysteine + reduced acceptor = selenide + L-alanine + acceptor
UniProtKB/Swiss-Prot Function: Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium.
UniProtKB/Swiss-Prot Induction: Up-regulated in acute glomerulonephritis. Regulated by JUN/AP-1.

Enzyme Numbers (IUBMB) for SCLY Gene

Gene Ontology (GO) - Molecular Function for SCLY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity --
GO:0009000 selenocysteine lyase activity IEA --
GO:0016740 transferase activity IEA --
GO:0016829 lyase activity --
GO:0030170 pyridoxal phosphate binding IEA --
genes like me logo Genes that share ontologies with SCLY: view

Phenotypes for SCLY Gene

genes like me logo Genes that share phenotypes with SCLY: view

miRNA for SCLY Gene

miRTarBase miRNAs that target SCLY

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCLY

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for SCLY Gene

Localization for SCLY Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCLY Gene

Cytoplasm, cytosol.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCLY Gene COMPARTMENTS Subcellular localization image for SCLY gene
Compartment Confidence
cytosol 4
mitochondrion 2
extracellular 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for SCLY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with SCLY: view

Pathways for SCLY Gene

genes like me logo Genes that share pathways with SCLY: view

Pathways by source for SCLY Gene

1 BioSystems pathway for SCLY Gene
2 KEGG pathways for SCLY Gene

Gene Ontology (GO) - Biological Process for SCLY Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001887 selenium compound metabolic process --
GO:0006520 cellular amino acid metabolic process TAS 10692412
GO:0006629 lipid metabolic process --
GO:0008152 metabolic process --
GO:0032868 response to insulin --
genes like me logo Genes that share ontologies with SCLY: view

Compounds for SCLY Gene

(4) HMDB Compounds for SCLY Gene

Compound Synonyms Cas Number PubMed IDs
Hydrogen selenide
  • Dihydrogen monoselenide
Not Available
L-Alanine
  • (2S)-2-Aminopropanoate
56-41-7
Pyridoxal 5'-phosphate
  • Apolon B6
54-47-7
Selenocysteine
  • (2R)-2-amino-3-selanylpropanoate
3614-08-2

(1) Drugbank Compounds for SCLY Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Pyridoxal Phosphate
  • Codecarboxylase
54-47-7 target cofactor

(3) Novoseek inferred chemical compound relationships for SCLY Gene

Compound -log(P) Hits PubMed IDs
selenocysteine 87.1 5
selenium 62.5 4
alanine 38.3 2
genes like me logo Genes that share compounds with SCLY: view

Transcripts for SCLY Gene

Unigene Clusters for SCLY Gene

Selenocysteine lyase:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCLY

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCLY Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^
SP1: - - - - - - -
SP2: - - - -
SP3: - - -
SP4: - -
SP5: - - - - - - -
SP6: - -
SP7: -
SP8: - -
SP9: - -
SP10: -
SP11: -

ExUns: 14a · 14b ^ 15a · 15b
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for SCLY Gene

GeneLoc Exon Structure for
SCLY
ECgene alternative splicing isoforms for
SCLY

Expression for SCLY Gene

mRNA expression in normal human tissues for SCLY Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SCLY Gene

SOURCE GeneReport for Unigene cluster for SCLY Gene Hs.731909

genes like me logo Genes that share expressions with SCLY: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SCLY Gene

Orthologs for SCLY Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SCLY Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCLY 35
  • 98.49 (n)
  • 98.38 (a)
SCLY 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCLY 35
  • 83.18 (n)
  • 82.57 (a)
SCLY 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCLY 35
  • 83.46 (n)
  • 83.81 (a)
SCLY 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scly 35
  • 82.05 (n)
  • 82.61 (a)
Scly 16
Scly 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCLY 36
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCLY 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Scly 35
  • 81.16 (n)
  • 82.37 (a)
chicken
(Gallus gallus)
Aves SCLY 35
  • 70.59 (n)
  • 71.57 (a)
SCLY 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCLY 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia scly 35
  • 62.51 (n)
  • 66.17 (a)
zebrafish
(Danio rerio)
Actinopterygii scly 35
  • 63.21 (n)
  • 63.37 (a)
scly 36
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Qtzl 36
  • 22 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F13H8.9 35
  • 48.64 (n)
  • 45.91 (a)
F13H8.9 36
  • 44 (a)
OneToOne
F13H8.9 37
  • 42 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NFS1 36
  • 29 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 49 (a)
OneToOne
Species with no ortholog for SCLY:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SCLY Gene

ENSEMBL:
Gene Tree for SCLY (if available)
TreeFam:
Gene Tree for SCLY (if available)

Paralogs for SCLY Gene

Paralogs for SCLY Gene

genes like me logo Genes that share paralogs with SCLY: view

Variants for SCLY Gene

Sequence variations from dbSNP and Humsavar for SCLY Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
VAR_038464 -
VAR_038465 -
VAR_038466 -

Structural Variations from Database of Genomic Variants (DGV) for SCLY Gene

Variant ID Type Subtype PubMed ID
nsv876062 CNV Loss 21882294
nsv508894 CNV Insertion 20534489
dgv4460n71 CNV Loss 21882294
esv2721746 CNV Deletion 23290073
esv1081669 CNV Insertion 17803354

Relevant External Links for SCLY Gene

HapMap Linkage Disequilibrium report
SCLY

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCLY Gene

Disorders for SCLY Gene

Relevant External Links for SCLY

Genetic Association Database (GAD)
SCLY
Human Genome Epidemiology (HuGE) Navigator
SCLY
genes like me logo Genes that share disorders with SCLY: view

No data available for UniProtKB/Swiss-Prot for SCLY Gene

Publications for SCLY Gene

  1. cDNA cloning, purification, and characterization of mouse liver selenocysteine lyase. Candidate for selenium delivery protein in selenoprotein synthesis. (PMID: 10692412) Mihara H. … Esaki N. (J. Biol. Chem. 2000) 2 3 4 23
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Characterization of selenocysteine lyase in human tissues and its relationship to tissue selenium concentrations. (PMID: 1483038) Daher R. … Van Lente F. (J Trace Elem Electrolytes Health Dis 1992) 3 23
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  5. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PMID: 21044950) Lee O.H. … Songyang Z. (Mol. Cell Proteomics 2011) 3

Products for SCLY Gene

Sources for SCLY Gene

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