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Aliases for SCHLAP1 Gene

Subcategory (RNA class) for SCHLAP1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SCHLAP1 Gene

  • SWI/SNF Complex Antagonist Associated With Prostate Cancer 1 (Non-Protein Coding) 2 3 5
  • Second Chromosome Locus Associated With Prostate 1 2 3
  • Long Intergenic Non-Protein Coding RNA 913 2 3
  • Prostate Cancer Associated Transcript 11 2 3
  • LINC00913 3
  • PCAT114 3
  • PCAT11 3

External Ids for SCHLAP1 Gene

Previous HGNC Symbols for SCHLAP1 Gene

  • LINC00913

Previous GeneCards Identifiers for SCHLAP1 Gene

  • GC02U903022

Summaries for SCHLAP1 Gene

GeneCards Summary for SCHLAP1 Gene

SCHLAP1 (SWI/SNF Complex Antagonist Associated With Prostate Cancer 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SCHLAP1 include Prostate Cancer 1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCHLAP1 Gene

Genomics for SCHLAP1 Gene

Regulatory Elements for SCHLAP1 Gene

Enhancers for SCHLAP1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SCHLAP1 on UCSC Golden Path with GeneCards custom track

Promoters for SCHLAP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SCHLAP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCHLAP1 Gene

180,692,104 bp from pter
180,916,939 bp from pter
224,836 bases
Plus strand

Genomic View for SCHLAP1 Gene

Genes around SCHLAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCHLAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCHLAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCHLAP1 Gene

Proteins for SCHLAP1 Gene

Post-translational modifications for SCHLAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCHLAP1 Gene

Domains & Families for SCHLAP1 Gene

Gene Families for SCHLAP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCHLAP1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCHLAP1 Gene

Function for SCHLAP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCHLAP1 Gene

Localization for SCHLAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCHLAP1 Gene

Pathways & Interactions for SCHLAP1 Gene

SuperPathways for SCHLAP1 Gene

No Data Available

Interacting Proteins for SCHLAP1 Gene

Gene Ontology (GO) - Biological Process for SCHLAP1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCHLAP1 Gene

Drugs & Compounds for SCHLAP1 Gene

No Compound Related Data Available

Transcripts for SCHLAP1 Gene

mRNA/cDNA for SCHLAP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCHLAP1 Gene

No ASD Table

Relevant External Links for SCHLAP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCHLAP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCHLAP1 Gene

Orthologs for SCHLAP1 Gene

Evolution for SCHLAP1 Gene

Gene Tree for SCHLAP1 (if available)
Gene Tree for SCHLAP1 (if available)

No data available for Orthologs for SCHLAP1 Gene

Paralogs for SCHLAP1 Gene

No data available for Paralogs for SCHLAP1 Gene

Variants for SCHLAP1 Gene

Sequence variations from dbSNP and Humsavar for SCHLAP1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1609303 -- 180,702,829(+) ctaag(A/T)cttct intron-variant
rs1881433 -- 180,698,125(+) CTTAC(A/G)TGGCA intron-variant
rs1919146 -- 180,699,066(+) ATGCC(A/G)GAAAC intron-variant
rs1009998 -- 180,714,586(+) GAATT(C/G)CCAAC intron-variant
rs1015227 -- 180,717,451(-) GCATA(A/T)GTAAA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SCHLAP1 Gene

Disorders for SCHLAP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCHLAP1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
prostate cancer 1
  • prostate cancer, familial
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SCHLAP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SCHLAP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCHLAP1 Gene

Publications for SCHLAP1 Gene

  1. Linking the SWI/SNF complex to prostate cancer. (PMID: 24165726) Lee R.S. … Roberts C.W. (Nat. Genet. 2013) 2 3 67
  2. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. (PMID: 24076601) Prensner J.R. … Chinnaiyan A.M. (Nat. Genet. 2013) 2 3
  3. RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1. (PMID: 25456366) Prensner J.R. … Feng F.Y. (Lancet Oncol. 2014) 3
  4. A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer. (PMID: 25499224) Mehra R. … Chinnaiyan A.M. (Neoplasia 2014) 3

Products for SCHLAP1 Gene

Sources for SCHLAP1 Gene