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Aliases for SCGB3A1 Gene

Aliases for SCGB3A1 Gene

  • Secretoglobin Family 3A Member 1 2 3
  • Pneumo Secretory Protein 2 2 3 4
  • Secretoglobin, Family 3A, Member 1 3 5
  • Uteroglobin-Related Protein 2 3 4
  • Cytokine High In Normal-1 2 3
  • High In Normal 1 3 4
  • Cytokine HIN-1 3 4
  • PnSP-2 3 4
  • UGRP2 3 4
  • HIN1 3 4
  • HIN-1 3
  • LU105 3
  • PNSP2 4

External Ids for SCGB3A1 Gene

Previous GeneCards Identifiers for SCGB3A1 Gene

  • GC05U990164
  • GC05M180995
  • GC05M180081
  • GC05M180126
  • GC05M179949
  • GC05M180017
  • GC05M174741

Summaries for SCGB3A1 Gene

GeneCards Summary for SCGB3A1 Gene

SCGB3A1 (Secretoglobin Family 3A Member 1) is a Protein Coding gene. Diseases associated with SCGB3A1 include Breast Cancer. GO annotations related to this gene include cytokine activity. An important paralog of this gene is SCGB3A2.

UniProtKB/Swiss-Prot for SCGB3A1 Gene

  • Potential growth inhibitory cytokine.

Gene Wiki entry for SCGB3A1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB3A1 Gene

Genomics for SCGB3A1 Gene

Regulatory Elements for SCGB3A1 Gene

Enhancers for SCGB3A1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SCGB3A1 on UCSC Golden Path with GeneCards custom track

Promoters for SCGB3A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SCGB3A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCGB3A1 Gene

Chromosome:
5
Start:
180,590,103 bp from pter
End:
180,591,540 bp from pter
Size:
1,438 bases
Orientation:
Minus strand

Genomic View for SCGB3A1 Gene

Genes around SCGB3A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB3A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB3A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB3A1 Gene

Proteins for SCGB3A1 Gene

  • Protein details for SCGB3A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96QR1-SG3A1_HUMAN
    Recommended name:
    Secretoglobin family 3A member 1
    Protein Accession:
    Q96QR1
    Secondary Accessions:
    • Q96PL0

    Protein attributes for SCGB3A1 Gene

    Size:
    104 amino acids
    Molecular mass:
    10100 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SCGB3A1 Gene

Proteomics data for SCGB3A1 Gene at MOPED

Post-translational modifications for SCGB3A1 Gene

No Post-translational modifications

Other Protein References for SCGB3A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for SCGB3A1 (HIN-1/SCGB3A1)
  • Cloud-Clone Corp. Antibodies for SCGB3A1
  • Santa Cruz Biotechnology (SCBT) Antibodies for SCGB3A1

No data available for DME Specific Peptides for SCGB3A1 Gene

Domains & Families for SCGB3A1 Gene

Gene Families for SCGB3A1 Gene

Protein Domains for SCGB3A1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SCGB3A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96QR1

UniProtKB/Swiss-Prot:

SG3A1_HUMAN :
  • Belongs to the secretoglobin family. UGRP subfamily.
Family:
  • Belongs to the secretoglobin family. UGRP subfamily.
genes like me logo Genes that share domains with SCGB3A1: view

Function for SCGB3A1 Gene

Molecular function for SCGB3A1 Gene

UniProtKB/Swiss-Prot Function:
Potential growth inhibitory cytokine.

Phenotypes for SCGB3A1 Gene

genes like me logo Genes that share phenotypes with SCGB3A1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SCGB3A1

CRISPR Products

miRNA for SCGB3A1 Gene

miRTarBase miRNAs that target SCGB3A1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCGB3A1 Gene

Localization for SCGB3A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCGB3A1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCGB3A1 Gene COMPARTMENTS Subcellular localization image for SCGB3A1 gene
Compartment Confidence
extracellular 5

No data available for Gene Ontology (GO) - Cellular Components for SCGB3A1 Gene

Pathways & Interactions for SCGB3A1 Gene

SuperPathways for SCGB3A1 Gene

No Data Available

Interacting Proteins for SCGB3A1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000292641%0d%0a9606.ENSP00000318916%0d%0a
Selected Interacting proteins: ENSP00000292641 Q96QR1-SG3A1_HUMAN for SCGB3A1 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for SCGB3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042127 regulation of cell proliferation NAS 11481438
GO:1901741 positive regulation of myoblast fusion IEA --
genes like me logo Genes that share ontologies with SCGB3A1: view

No data available for Pathways by source and SIGNOR curated interactions for SCGB3A1 Gene

Drugs & Compounds for SCGB3A1 Gene

(1) Additional Compounds for SCGB3A1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with SCGB3A1: view

Transcripts for SCGB3A1 Gene

mRNA/cDNA for SCGB3A1 Gene

Unigene Clusters for SCGB3A1 Gene

Secretoglobin, family 3A, member 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB3A1 Gene

No ASD Table

Relevant External Links for SCGB3A1 Gene

GeneLoc Exon Structure for
SCGB3A1
ECgene alternative splicing isoforms for
SCGB3A1

Expression for SCGB3A1 Gene

mRNA expression in normal human tissues for SCGB3A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SCGB3A1 Gene

This gene is overexpressed in Minor Salivary Gland (x24.1), Cervix - Endocervix (x12.0), and Lung (x8.1).

Protein differential expression in normal tissues from HIPED for SCGB3A1 Gene

This gene is overexpressed in Fetal gut (56.9) and Plasma (12.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SCGB3A1 Gene



SOURCE GeneReport for Unigene cluster for SCGB3A1 Gene Hs.62492

mRNA Expression by UniProt/SwissProt for SCGB3A1 Gene

Q96QR1-SG3A1_HUMAN
Tissue specificity: Highly expressed in breast tissues. Absent in breast cancer cell lines.
genes like me logo Genes that share expression patterns with SCGB3A1: view

Protein tissue co-expression partners for SCGB3A1 Gene

Primer Products

Orthologs for SCGB3A1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCGB3A1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Scgb3a1 35
  • 69.64 (n)
  • 60.4 (a)
Scgb3a1 16
Scgb3a1 36
  • 58 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SCGB3A1 35
  • 98.08 (n)
  • 95.19 (a)
SCGB3A1 36
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Scgb3a1 35
  • 70.63 (n)
  • 63.37 (a)
oppossum
(Monodelphis domestica)
Mammalia SCGB3A1 36
  • 43 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 43 (a)
OneToMany
Species with no ortholog for SCGB3A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCGB3A1 Gene

ENSEMBL:
Gene Tree for SCGB3A1 (if available)
TreeFam:
Gene Tree for SCGB3A1 (if available)

Paralogs for SCGB3A1 Gene

Paralogs for SCGB3A1 Gene

(2) SIMAP similar genes for SCGB3A1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCGB3A1: view

Variants for SCGB3A1 Gene

Sequence variations from dbSNP and Humsavar for SCGB3A1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs3806857 -- 180,592,198(+) GCTTT(C/T)AGTCC upstream-variant-2KB
rs3822407 -- 180,592,341(+) AAACA(A/G)GCTCC upstream-variant-2KB
rs307802 -- 180,592,237(+) GGCAT(C/T)GAGCA upstream-variant-2KB
rs307803 -- 180,592,395(+) TTCCC(C/T)ATGGC upstream-variant-2KB
rs307804 -- 180,592,952(+) atagg(C/T)gtgca upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCGB3A1 Gene

Variant ID Type Subtype PubMed ID
nsv509111 CNV Insertion 20534489
dgv6404n71 CNV Loss 21882294
dgv6405n71 CNV Loss 21882294

Variation tolerance for SCGB3A1 Gene

Gene Damage Index Score: 0.54; 11.69% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SCGB3A1 Gene

Disorders for SCGB3A1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCGB3A1 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
breast cancer
  • breast cancer, invasive ductal
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SCGB3A1

Genetic Association Database (GAD)
SCGB3A1
Human Genome Epidemiology (HuGE) Navigator
SCGB3A1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCGB3A1
genes like me logo Genes that share disorders with SCGB3A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCGB3A1 Gene

Publications for SCGB3A1 Gene

  1. HIN-1, a putative cytokine highly expressed in normal but not cancerous mammary epithelial cells. (PMID: 11481438) Krop I.E. … Polyak K. (Proc. Natl. Acad. Sci. U.S.A. 2001) 2 3 4 23 67
  2. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson B.C. … Vasiliou V. (Hum. Genomics 2011) 2 3
  3. Promoter methylation of HIN-1 in the progression to esophageal squamous cancer. (PMID: 19098448) Guo M. … Carraway H.E. (Epigenetics 2008) 3 23
  4. DNA methylation profiling of ovarian carcinomas and their in vitro models identifies HOXA9, HOXB5, SCGB3A1, and CRABP1 as novel targets. (PMID: 17623056) Wu Q. … Lind G.E. (Mol. Cancer 2007) 3 23
  5. Aberrant methylation of HIN-1 (high in normal-1) is a frequent event in many human malignancies. (PMID: 15472908) Shigematsu H. … Gazdar A.F. (Int. J. Cancer 2005) 3 23

Products for SCGB3A1 Gene

Sources for SCGB3A1 Gene

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