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Aliases for SCGB3A1 Gene

Aliases for SCGB3A1 Gene

  • Secretoglobin, Family 3A, Member 1 2 3
  • Pneumo Secretory Protein 2 2 3 4
  • HIN1 3 4 6
  • Uteroglobin-Related Protein 2 3 4
  • Cytokine High In Normal-1 2 3
  • High In Normal 1 3 4
  • Cytokine HIN-1 3 4
  • PnSP-2 3 4
  • UGRP2 3 4
  • Secretoglobin Family 3A Member 1 3
  • HIN-1 3
  • LU105 3
  • PNSP2 4

External Ids for SCGB3A1 Gene

Previous GeneCards Identifiers for SCGB3A1 Gene

  • GC05U990164
  • GC05M180995
  • GC05M180081
  • GC05M180126
  • GC05M179949
  • GC05M180017
  • GC05M174741

Summaries for SCGB3A1 Gene

GeneCards Summary for SCGB3A1 Gene

SCGB3A1 (Secretoglobin, Family 3A, Member 1) is a Protein Coding gene. Diseases associated with SCGB3A1 include sporadic breast cancer and oral squamous cell carcinoma. GO annotations related to this gene include cytokine activity. An important paralog of this gene is SCGB3A2.

UniProtKB/Swiss-Prot for SCGB3A1 Gene

  • Potential growth inhibitory cytokine

Gene Wiki entry for SCGB3A1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB3A1 Gene

Genomics for SCGB3A1 Gene

Regulatory Elements for SCGB3A1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SCGB3A1 Gene

Start:
180,590,103 bp from pter
End:
180,591,540 bp from pter
Size:
1,438 bases
Orientation:
Minus strand

Genomic View for SCGB3A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCGB3A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB3A1 Gene

Proteins for SCGB3A1 Gene

  • Protein details for SCGB3A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96QR1-SG3A1_HUMAN
    Recommended name:
    Secretoglobin family 3A member 1
    Protein Accession:
    Q96QR1
    Secondary Accessions:
    • Q96PL0

    Protein attributes for SCGB3A1 Gene

    Size:
    104 amino acids
    Molecular mass:
    10100 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SCGB3A1 Gene

Proteomics data for SCGB3A1 Gene at MOPED

Post-translational modifications for SCGB3A1 Gene

No Post-translational modifications

Other Protein References for SCGB3A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SCGB3A1 Gene

Domains for SCGB3A1 Gene

Gene Families for SCGB3A1 Gene

HGNC:
  • SCGB :Secretoglobins

Protein Domains for SCGB3A1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SCGB3A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96QR1

UniProtKB/Swiss-Prot:

SG3A1_HUMAN :
  • Q96QR1
Family:
  • Belongs to the secretoglobin family. UGRP subfamily.
genes like me logo Genes that share domains with SCGB3A1: view

Function for SCGB3A1 Gene

Molecular function for SCGB3A1 Gene

UniProtKB/Swiss-Prot Function: Potential growth inhibitory cytokine

Gene Ontology (GO) - Molecular Function for SCGB3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005125 cytokine activity NAS 11481438
genes like me logo Genes that share ontologies with SCGB3A1: view

Animal Model Products

CRISPR Products

miRNA for SCGB3A1 Gene

miRTarBase miRNAs that target SCGB3A1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCGB3A1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SCGB3A1 Gene

Localization for SCGB3A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCGB3A1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCGB3A1 Gene COMPARTMENTS Subcellular localization image for SCGB3A1 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for SCGB3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 11481438
GO:0070062 extracellular exosome IDA 19199708
genes like me logo Genes that share ontologies with SCGB3A1: view

Pathways for SCGB3A1 Gene

SuperPathways for SCGB3A1 Gene

No Data Available

Interacting Proteins for SCGB3A1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000292641%0d%0a9606.ENSP00000318916%0d%0a
Selected Interacting proteins: ENSP00000292641 Q96QR1-SG3A1_HUMAN for SCGB3A1 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for SCGB3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030308 negative regulation of cell growth NAS 11481438
GO:0042127 regulation of cell proliferation NAS 11481438
GO:1901741 positive regulation of myoblast fusion IEA --
genes like me logo Genes that share ontologies with SCGB3A1: view

No data available for Pathways by source for SCGB3A1 Gene

Compounds for SCGB3A1 Gene

(1) Novoseek inferred chemical compound relationships for SCGB3A1 Gene

Compound -log(P) Hits PubMed IDs
5-aza-2deoxycytidine 59.4 1
genes like me logo Genes that share compounds with SCGB3A1: view

Transcripts for SCGB3A1 Gene

mRNA/cDNA for SCGB3A1 Gene

Unigene Clusters for SCGB3A1 Gene

Secretoglobin, family 3A, member 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCGB3A1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB3A1 Gene

No ASD Table

Relevant External Links for SCGB3A1 Gene

GeneLoc Exon Structure for
SCGB3A1
ECgene alternative splicing isoforms for
SCGB3A1

Expression for SCGB3A1 Gene

mRNA expression in normal human tissues for SCGB3A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SCGB3A1 Gene

This gene is overexpressed in Minor Salivary Gland (24.1), Cervix - Endocervix (12.0), and Lung (8.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SCGB3A1 Gene

SOURCE GeneReport for Unigene cluster for SCGB3A1 Gene Hs.62492

mRNA Expression by UniProt/SwissProt for SCGB3A1 Gene

Q96QR1-SG3A1_HUMAN
Tissue specificity: Highly expressed in breast tissues. Absent in breast cancer cell lines
genes like me logo Genes that share expressions with SCGB3A1: view

In Situ Assay Products

Orthologs for SCGB3A1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCGB3A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCGB3A1 35
  • 98.08 (n)
  • 95.19 (a)
SCGB3A1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scgb3a1 35
  • 69.64 (n)
  • 60.4 (a)
Scgb3a1 16
Scgb3a1 36
  • 58 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCGB3A1 36
  • 43 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 43 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Scgb3a1 35
  • 70.63 (n)
  • 63.37 (a)
Species with no ortholog for SCGB3A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCGB3A1 Gene

ENSEMBL:
Gene Tree for SCGB3A1 (if available)
TreeFam:
Gene Tree for SCGB3A1 (if available)

Paralogs for SCGB3A1 Gene

Paralogs for SCGB3A1 Gene

Selected SIMAP similar genes for SCGB3A1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCGB3A1: view

Variants for SCGB3A1 Gene

Sequence variations from dbSNP and Humsavar for SCGB3A1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs307802 -- 180,592,237(+) GGCAT(C/T)GAGCA upstream-variant-2KB
rs307803 -- 180,592,395(+) TTCCC(C/T)ATGGC upstream-variant-2KB
rs307804 -- 180,592,952(+) atagg(C/T)gtgca upstream-variant-2KB
rs368686 -- 180,589,644(+) AGAGT(A/G)GAAGG downstream-variant-500B
rs450383 -- 180,590,399(+) GGCCA(C/T)CTCCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCGB3A1 Gene

Variant ID Type Subtype PubMed ID
nsv509111 CNV Insertion 20534489
dgv6404n71 CNV Loss 21882294
dgv6405n71 CNV Loss 21882294

Relevant External Links for SCGB3A1 Gene

HapMap Linkage Disequilibrium report
SCGB3A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCGB3A1 Gene

Disorders for SCGB3A1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (4) Diseases for SCGB3A1 Gene including...

Search for SCGB3A1 Gene in MalaCards »

(7) Novoseek inferred disease relationships for SCGB3A1 Gene

Disease -log(P) Hits PubMed IDs
breast carcinoma 44.1 4
small cell lung cancer 42.4 1
primary tumor 40.1 3
nsclc 31.8 2
tumors 25.4 19

Relevant External Links for SCGB3A1

Genetic Association Database (GAD)
SCGB3A1
Human Genome Epidemiology (HuGE) Navigator
SCGB3A1
genes like me logo Genes that share disorders with SCGB3A1: view

No data available for UniProtKB/Swiss-Prot for SCGB3A1 Gene

Publications for SCGB3A1 Gene

  1. HIN-1, a putative cytokine highly expressed in normal but not cancerous mammary epithelial cells. (PMID: 11481438) Krop I.E. … Polyak K. (Proc. Natl. Acad. Sci. U.S.A. 2001) 2 3 4 23
  2. Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways. (PMID: 12406855) Reynolds S.D. … Stripp B.R. (Am. J. Respir. Crit. Care Med. 2002) 3 23
  3. Cloning, expression, and chromosomal localization of the mouse gene (Scgb3a1, alias Ugrp2) that encodes a member of the novel uteroglobin-related protein gene family. (PMID: 12438750) Niimi T. … Kimura S. (Cytogenet. Genome Res. 2002) 3 23
  4. Lack of HIN-1 methylation in BRCA1-linked and "BRCA1-like" breast tumors. (PMID: 12727813) Krop I. … Polyak K. (Cancer Res. 2003) 3 23
  5. Down regulation of high in normal-1 (HIN-1) is a frequent event in stage I non-small cell lung cancer and correlates with poor clinical outcome. (PMID: 14977834) Marchetti A. … Buttitta F. (Clin. Cancer Res. 2004) 3 23

Products for SCGB3A1 Gene

  • antibodies-online proteins for SCGB3A1
  • antibodies-online antibodies for SCGB3A1
  • antibodies-online kits for SCGB3A1

Sources for SCGB3A1 Gene

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