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Aliases for SCGB2B3P Gene

Aliases for SCGB2B3P Gene

  • Secretoglobin Family 2B Member 3, Pseudogene 2 3 5
  • Secretoglobin-Like Pseudogene 3
  • SCGB4A3P 3
  • C2B 3

External Ids for SCGB2B3P Gene

Previous GeneCards Identifiers for SCGB2B3P Gene

  • GC19P035137

Summaries for SCGB2B3P Gene

GeneCards Summary for SCGB2B3P Gene

SCGB2B3P (Secretoglobin Family 2B Member 3, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB2B3P Gene

Genomics for SCGB2B3P Gene

Regulatory Elements for SCGB2B3P Gene

Enhancers for SCGB2B3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G034645 0.9 ENCODE 0.7 +0.2 152 1.2 ZSCAN4 RAD21 YY1 RARA TCF12 RELB CREM IKZF2 GATAD2B REST ZNF181 ZNF302 SCGB2B3P SCGB2B2
GH19G034663 0.9 ENCODE 0.4 +17.5 17489 0.2 HDAC1 CBX3 RB1 SIN3A ZNF48 RAD21 ZNF143 KLF7 CREM GATAD2B FXYD7 SCGB2B2 SCGB2B3P
GH19G034666 1.1 Ensembl ENCODE 0.3 +21.8 21793 1.2 KLF17 ZNF2 GLIS2 SP3 ZEB2 ZNF645 ZNF518A ZFP69B ZSCAN16 ZNF341 ZNF302 ZNF181 ENSG00000268947 TMEM147-AS1 ZNF599 SCGB2B2 SCGB2B3P
GH19G034672 1 ENCODE 0.3 +28.0 28029 2.8 FOXA2 PKNOX1 MLX ARNT ARID4B ZNF766 GATA2 ELK1 FOS KLF13 ZNF302 ZNF181 RBM42 ZNF599 SCGB2B2 SCGB2B3P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Genomic Location for SCGB2B3P Gene

Chromosome:
19
Start:
34,645,662 bp from pter
End:
34,646,070 bp from pter
Size:
409 bases
Orientation:
Plus strand

Genomic View for SCGB2B3P Gene

Genes around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB2B3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB2B3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB2B3P Gene

Proteins for SCGB2B3P Gene

Post-translational modifications for SCGB2B3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB2B3P Gene

Domains & Families for SCGB2B3P Gene

Gene Families for SCGB2B3P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCGB2B3P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCGB2B3P Gene

Function for SCGB2B3P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB2B3P Gene

Localization for SCGB2B3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCGB2B3P Gene

Pathways & Interactions for SCGB2B3P Gene

SuperPathways for SCGB2B3P Gene

No Data Available

Interacting Proteins for SCGB2B3P Gene

Gene Ontology (GO) - Biological Process for SCGB2B3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCGB2B3P Gene

Drugs & Compounds for SCGB2B3P Gene

No Compound Related Data Available

Transcripts for SCGB2B3P Gene

mRNA/cDNA for SCGB2B3P Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCGB2B3P Gene

Secretoglobin, family 2B, member 3, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB2B3P Gene

No ASD Table

Relevant External Links for SCGB2B3P Gene

GeneLoc Exon Structure for
SCGB2B3P
ECgene alternative splicing isoforms for
SCGB2B3P

Expression for SCGB2B3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB2B3P Gene

NURSA nuclear receptor signaling pathways regulating expression of SCGB2B3P Gene:

SCGB2B3P

SOURCE GeneReport for Unigene cluster for SCGB2B3P Gene:

Hs.679909
genes like me logo Genes that share expression patterns with SCGB2B3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB2B3P Gene

Orthologs for SCGB2B3P Gene

Evolution for SCGB2B3P Gene

ENSEMBL:
Gene Tree for SCGB2B3P (if available)
TreeFam:
Gene Tree for SCGB2B3P (if available)

No data available for Orthologs for SCGB2B3P Gene

Paralogs for SCGB2B3P Gene

No data available for Paralogs for SCGB2B3P Gene

Variants for SCGB2B3P Gene

Sequence variations from dbSNP and Humsavar for SCGB2B3P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000501502 -- 34,644,740(+) ATTAT(A/G)TTAAT intron-variant, upstream-variant-2KB
rs1001262888 -- 34,645,431(+) TATGC(C/T)GCCAG intron-variant, upstream-variant-2KB
rs1001295247 -- 34,645,600(+) AGATA(C/T)ACATA intron-variant, upstream-variant-2KB
rs1002411335 -- 34,644,359(+) TTTTT(-/TTTG)TTTTT intron-variant, upstream-variant-2KB
rs1002936426 -- 34,644,188(+) AACAG(A/G)TAGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCGB2B3P Gene

Variant ID Type Subtype PubMed ID
esv2758756 CNV gain 17122850
esv3329051 OTHER inversion 20981092
esv5547 OTHER inversion 19470904
nsv1064154 CNV loss 25217958

Relevant External Links for SCGB2B3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB2B3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCGB2B3P Gene

Disorders for SCGB2B3P Gene

Relevant External Links for SCGB2B3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCGB2B3P

No disorders were found for SCGB2B3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCGB2B3P Gene

Publications for SCGB2B3P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson B.C. … Vasiliou V. (Hum. Genomics 2011) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SCGB2B3P Gene

Sources for SCGB2B3P Gene

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