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Aliases for SCGB2B3P Gene

Aliases for SCGB2B3P Gene

  • Secretoglobin Family 2B Member 3, Pseudogene 2 3 5
  • Secretoglobin-Like Pseudogene 3
  • SCGB4A3P 3
  • C2B 3

External Ids for SCGB2B3P Gene

Previous GeneCards Identifiers for SCGB2B3P Gene

  • GC19P035137

Summaries for SCGB2B3P Gene

GeneCards Summary for SCGB2B3P Gene

SCGB2B3P (Secretoglobin Family 2B Member 3, Pseudogene) is a Pseudogene.

Additional gene information for SCGB2B3P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB2B3P Gene

Genomics for SCGB2B3P Gene

GeneHancer (GH) Regulatory Elements for SCGB2B3P Gene

Promoters and enhancers for SCGB2B3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I034645 Enhancer 0.5 ENCODE 550.8 +0.2 151 1.2 CTCF E2F1 GATA3 ZSCAN4 CBFA2T3 RCOR1 CHD2 ENSG00000279971 SCGB2B3P ZNF181 ZNF302 SCGB2B2
GH19I034666 Enhancer 1 Ensembl ENCODE 0.3 +21.8 21792 1.2 KLF17 ZNF2 ZNF335 GLIS2 SP3 ZNF645 ZEB2 ZNF518A ZNF148 ZFP69B ZNF302 ZNF599 TMEM147-AS1 ZNF181 HAUS5 LSM14A ENSG00000268947 KIAA0355 SCGB2B2 SCGB2B3P
GH19I034663 Enhancer 0.7 ENCODE 0.4 +17.5 17489 0.2 ZSCAN5A CTCF MAX TSC22D4 RAD21 ZNF143 KLF7 ZNF687 L3MBTL2 HLF MAG FXYD7 SCGB2B2 SCGB2B3P
GH19I034672 Enhancer 0.8 ENCODE 0.3 +28.0 28028 2.8 ELF3 FOXA2 MLX ARID4B RARA ETS1 ATF7 CREM THAP11 SP5 ZNF302 ZNF181 ZNF599 SCGB2B2 SCGB2B3P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCGB2B3P Gene

Genomic Locations for SCGB2B3P Gene
chr19:34,645,662-34,646,070
(GRCh38/hg38)
Size:
409 bases
Orientation:
Plus strand
chr19:35,136,289-35,137,743
(GRCh37/hg19)

Genomic View for SCGB2B3P Gene

Genes around SCGB2B3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB2B3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB2B3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB2B3P Gene

Proteins for SCGB2B3P Gene

Post-translational modifications for SCGB2B3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB2B3P Gene

Domains & Families for SCGB2B3P Gene

Gene Families for SCGB2B3P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCGB2B3P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCGB2B3P Gene

Function for SCGB2B3P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB2B3P Gene

Localization for SCGB2B3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB2B3P Gene

Pathways & Interactions for SCGB2B3P Gene

SuperPathways for SCGB2B3P Gene

No Data Available

Interacting Proteins for SCGB2B3P Gene

Gene Ontology (GO) - Biological Process for SCGB2B3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCGB2B3P Gene

Drugs & Compounds for SCGB2B3P Gene

No Compound Related Data Available

Transcripts for SCGB2B3P Gene

mRNA/cDNA for SCGB2B3P Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCGB2B3P Gene

Secretoglobin, family 2B, member 3, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB2B3P Gene

No ASD Table

Relevant External Links for SCGB2B3P Gene

GeneLoc Exon Structure for
SCGB2B3P
ECgene alternative splicing isoforms for
SCGB2B3P

Expression for SCGB2B3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB2B3P Gene

NURSA nuclear receptor signaling pathways regulating expression of SCGB2B3P Gene:

SCGB2B3P

SOURCE GeneReport for Unigene cluster for SCGB2B3P Gene:

Hs.679909
genes like me logo Genes that share expression patterns with SCGB2B3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB2B3P Gene

Orthologs for SCGB2B3P Gene

Evolution for SCGB2B3P Gene

ENSEMBL:
Gene Tree for SCGB2B3P (if available)
TreeFam:
Gene Tree for SCGB2B3P (if available)

No data available for Orthologs for SCGB2B3P Gene

Paralogs for SCGB2B3P Gene

No data available for Paralogs for SCGB2B3P Gene

Variants for SCGB2B3P Gene

Sequence variations from dbSNP and Humsavar for SCGB2B3P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000501502 -- 34,644,740(+) A/G upstream_transcript_variant
rs1001262888 -- 34,645,431(+) T/C upstream_transcript_variant
rs1001295247 -- 34,645,600(+) C/T upstream_transcript_variant
rs1002411335 -- 34,644,359(+) TTTGTTT/TTT upstream_transcript_variant
rs1002936426 -- 34,644,188(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCGB2B3P Gene

Variant ID Type Subtype PubMed ID
esv2758756 CNV gain 17122850
esv3329051 OTHER inversion 20981092
esv5547 OTHER inversion 19470904
nsv1064154 CNV loss 25217958

Additional Variant Information for SCGB2B3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB2B3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCGB2B3P Gene

Disorders for SCGB2B3P Gene

Additional Disease Information for SCGB2B3P

No disorders were found for SCGB2B3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCGB2B3P Gene

Publications for SCGB2B3P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SCGB2B3P Gene

Sources for SCGB2B3P Gene

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