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SCGB2A2 Gene

protein-coding GIFtS: 53

GC11P061794

secretoglobin, family 2A, member 2
(Previous name: mammaglobin 1 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: MGB1)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
MGB1 ^², ³, ⁵
MGC71974 ^¹, ²
Mammaglobin-1 ^³
UGB2 ^¹, ², ³

Descriptions
Secretoglobin family 2A member 2 ^³
mammaglobin 1 ^¹, ²
mammaglobin A ^²
secretoglobin, family 2A, member 2 ^²

External Ids
HGNC: 7050¹
Entrez Gene: 4250²
UniProtKB: Q13296³
Ensembl: ENSG00000110484⁷

Search outside databases for aliases for SCGB2A2 gene

Previous GC identifers: GC11P064551 GC11P063613 GC11P062288 GC11P061812

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Gene Wiki entry for SCGB2A2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the SCGB2A2 gene

Entrez Gene cytogenetic band: 11q13 Ensembl cytogenetic band: 11q12.3 HGNC cytogenetic band: 11q13

SCGB2A2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11P061794: (about GC identifiers)

Start:	61,794,206 bp from pter
End:	61,797,204 bp from pter
Size:	2,999 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000011.8 NT_033903.7

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: SG2A2_HUMAN, Q13296 (See protein sequence)

Recommended Name: Mammaglobin-A precursor

Size: 93 amino acids; 10499 Da

Secondary accessions: A1A522 Q86WH8

Alternative splicing: 2 isoforms: Q13296-1 Q13296-2

REFSEQ proteins: NP_002402.1

ENSEMBL proteins:

ENSP00000227918

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (Mammaglobin A)
	Human Recombinant Proteins from Abnova (SCGB2A2)

OriGene Purified Recombinant Human Protein: SCGB2A2

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--

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Antibodies for SCGB2A2:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (Mammaglobin A), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (SCGB2A2)
	Novus Biologicals Antibodies for SCGB2A2

Assays for SCGB2A2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q13296

ProtoNet protein and cluster: Q13296

1 Blocks protein family: IPB003628 Uteroglobin subtype

UniProtKB/Swiss-Prot: SG2A2_HUMAN, Q13296

Similarity: Belongs to the secretoglobin family. Lipophilin subfamily

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SCGB2A2)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002411

Applied Biosystems Silencer® siRNAs for SCGB2A2

Sigma-Aldrich siRNA for SCGB2A2

Sigma-Aldrich shRNA for SCGB2A2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for SCGB2A2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_002411
Myc/DDK tagged cDNA clone in CMV expression vector: NM_002411
untagged cDNA clones in CMV expression vector (see all 2): NM_002411

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_002411

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005488	binding	IEA	--
GO:0005496	steroid binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008150	biological_process	ND	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SCGB2A2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (SCGB2A2)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002411

Sigma-Aldrich siRNA for SCGB2A2

Sigma-Aldrich shRNA for SCGB2A2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_002411

REFSEQ mRNAs for SCGB2A2 gene:

NM_002411.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_002411

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002411
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_002411
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_002411

Additional cDNA sequence:

AY217100.1 BC067220.1 BC128252.1 BC128402.1 U33147.1

3 DOTS entries:

DT.109282 DT.97812058 DT.75152339

22 AceView cDNA sequences:

AI904282 AA513632 AY217100 NM_002411 AI791322 AI904278 U33147 AI732533

AI732534 AA513640 BC067220 AA513647 AA991451 CD000816 AI905265 BG207094

BG185363 CA454060 BE694112 BQ028215 BE927089 AW175603

highest scoring ESTs for SCGB2A2:

U33147 AA513640 AA513647 AA991451 AI732534 AI791322 AI904278 AI904282 AW175603 AY217100

Unigene Cluster for SCGB2A2:

Secretoglobin, family 2A, member 2

Hs.46452 [show with all ESTs]

Unigene Representative Sequence: BC067220

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for SCGB2A2

ExUns:	1a	·	1b	^	2a	·	2b	·	2c	^	3a	·	3b
SP1:									-
SP2:							-		-
SP3:

About this scheme

ECgene alternative splicing isoforms for SCGB2A2

1 Ensembl transcript including schematic representation:

ENST00000227918

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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SCGB2A2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for SCGB2A2

¹ / ² / ³

3 probe-sets matching SCGB2A2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
36329_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	U33147	1.00	1.00	1.00	1
206378_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_002411	0.60	1.00	0.82	1
206378_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.46452
Expression variation in blood from EXPOLDB for SCGB2A2
UniProtKB/Swiss-Prot: SG2A2_HUMAN, Q13296
Tissue specificity: Mammary gland specific. Over-expressed in breast cancer

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for SCGB2A2 gene from 2 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
cow (Bos taurus)	SCGB2A2¹	--	secretoglobin, family 2A, member 2	67.78(n) 53.33(a)	786072 XM_001251934.1 XP_001251935.1
mouse (Mus musculus)	Scgb2a2⁵	19	secretoglobin, family 2A, member 2	--	-

About this table Species with no ortholog for SCGB2A2

ENSEMBL Gene Tree for SCGB2A2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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Paralogs for SCGB2A2 gene

SCGB2A1²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/45 NCBI SNPs in SCGB2A2 are shown (see all 45 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 33)

AB	SNP ID	Valid	Chr 11 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs11603383^1,2	A,C,F,H	61794159(+)	`ATTAAG/AATGCC`	1	--	ng5¹		12		EA NA EU WA	996
--	rs7125138^1,2	C,F,H	61793445(+)	`cattgC/Tgaccg`	1	--	ng5¹		4		EU EA WA	416
	rs17709552^1,2	C,F,H	61797095(+)	`AACCAA/GCTACG`	1	--	ut3¹		15		NA EU EA WA	1400
	rs12800927^1,2	C,F,H	61792253(+)	`AGAACC/TGACTC`	1	--	ng5¹		7		EU EA WA NA	560
	rs12799149^1,2	F,H	61797414(+)	`TCCCCC/TGTCGA`	1	--	ng3¹		4		EU EA WA	410
--	rs4963487^1,2	C	61793477(+)	`GAAGCA/GTCCTT`	1	--	ng5¹		3		NA	142
--	rs12282346^1,2	A	61792514(+)	`ctgacC/Ttcatg`	1	--	ng5¹		0	--	--	--	--
	rs7129637^1,2	A,C,F,H	61795328(+)	`GTGGAT/AGATAA`	1	--	int¹ ese³		4		EU EA WA	420
--	rs4963488^1,2	A,C,F,H	61795977(+)	`AATTGT/CCTCAA`	1	--	int¹ ese³		8		EU EA WA	838
	rs11603171^1,2	C,F,H	61796823(+)	`TATTTA/TAAAAG`	1	--	int¹		6		EU EA WA NA	600

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HapMap Linkage Disequilibrium images for SCGB2A2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 605562

9 Novoseek disease relationships for SCGB2A2 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
breast cancer	66.87	45	17192791 (8), 15096563 (4), 14696125 (3), 18451221 (3) (see all 18)
breast cancer metastatic	61.64	2	15096563 (1)
breast carcinoma	58.99	2	12563241 (1), 16538532 (1)
adenocarcinoma lung	40.83	3	15096563 (1), 17192791 (1)
tumors	33.62	24	16603086 (3), 14515009 (3), 17192791 (2), 18451221 (2) (see all 11)
primary tumor	25.37	2	12019145 (1), 10767368 (1)
metastasis	22.82	7	15151203 (2), 17192791 (2), 12019145 (1), 16925986 (1)
cancer	14.49	5	17192791 (2), 16760290 (1), 16603086 (1)
carcinoma	10.86	2	15451460 (1)

About this table

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/51 PubMed articles for SCGB2A2 gene (see all 51 ):

Structure and transcriptional regulation of the human mammaglobin gene, a breast cancer associated member of the uteroglobin gene family localized to chromosome 11q13. (PubMed id 9488047)^{2, 3, 4} Watson M.A.... Fleming T. (1998)
Mammaglobin, a mammary-specific member of the uteroglobin gene family, is overexpressed in human breast cancer. (PubMed id 8631025)^{2, 3, 4} Watson M.A. and Fleming T.P. (1996)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Breast-specific expression of MGB1/mammaglobin: an examination of 480 tumors from various organs and clinicopathological analysis of MGB1-positive breast cancers. (PubMed id 17192791)^{1, 3} Sasaki E....Yatabe Y. (2007)
Detection and quantification of mammaglobin in the blood of breast cancer patients: can it be useful as a potential clinical marker? Preliminary results of a GOIM (Gruppo Oncologico dell'Italia Meridionale) prospective study. (PubMed id 16760290)^{1, 3} Gargano G....Russo A. (2006)
Expression of mammaglobins A and B in nasal polyps is similar in patients with and without allergic rhinitis. (PubMed id 18416968)^{1, 3} Chusakul S....Shotelersuk V. (2008)
Prognostic value of the molecular detection of circulating tumor cells using a multimarker reverse transcription-PCR assay for cytokeratin 19, mammaglobin A, and HER2 in early breast cancer. (PubMed id 18451221)^{1, 3} Ignatiadis M....Mavroudis D. (2008)
Highly sensitive detection of the MGB1 transcript (mammaglobin) in the peripheral blood of breast cancer patients. (PubMed id 14696125)^{1, 3} Cerveira N....Castedo S. (2004)
RT-PCR for mammaglobin genes, MGB1 and MGB2, identifies breast cancer micrometastases in sentinel lymph nodes. (PubMed id 15151203)^{1, 3} Ouellette R.J....Maicas E. (2004)
Detection of Mammaglobin A-mRNA-positive circulating tumor cells in peripheral blood of patients with operable breast cancer with nested RT-PCR. (PubMed id 16925986)^{1, 3} Ntoulia M....Lianidou E.S. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 4250	HGNC: 7050	AceView: SCGB2A2	Ensembl:ENSG00000110484	euGenes: HUgn4250
ECgene: SCGB2A2	H-InvDB: SCGB2A2

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
ATLAS Chromosomes in Cancer entry for SCGB2A2	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for SCGB2A2
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for SCGB2A2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for SCGB2A2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for SCGB2A2		Browse antibodies at Sigma-Aldrich
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	Recombinant & Natural Proteins

	Recombinant Proteins (SCGB2A2)
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	shRNA in GFP-retroviral vector

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SCGB2A2 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for SCGB2A2

Summaries
for SCGB2A2

Genomic Location
for SCGB2A2

Proteins
for SCGB2A2

Protein Domains/
Families
for SCGB2A2

Gene Function
for SCGB2A2

Pathways & Interactions
for SCGB2A2

Drugs & Compounds
for SCGB2A2

Transcripts
for SCGB2A2

Expression
for SCGB2A2

Orthologs
for SCGB2A2

Paralogs
for SCGB2A2

SNPs/Variants
for SCGB2A2

Disorders & Mutations
for SCGB2A2

Medical News
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Publications
for SCGB2A2

Search for SCGB2A2

Genome Databases showing SCGB2A2

Other Databases showing SCGB2A2

Specialized Databases showing SCGB2A2

Licensable Technologies
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Services
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

SCGB2A2 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor SCGB2A2

Summariesfor SCGB2A2

Genomic Locationfor SCGB2A2

Proteinsfor SCGB2A2

Protein Domains/Familiesfor SCGB2A2

Gene Functionfor SCGB2A2

Pathways & Interactionsfor SCGB2A2

Drugs & Compoundsfor SCGB2A2

Transcriptsfor SCGB2A2

Expression for SCGB2A2

Orthologsfor SCGB2A2

Paralogsfor SCGB2A2

SNPs/Variantsfor SCGB2A2

Disorders & Mutationsfor SCGB2A2

Medical Newsfor SCGB2A2

Publicationsfor SCGB2A2

Search for SCGB2A2

Genome Databases showing SCGB2A2

Other Databases showing SCGB2A2

Specialized Databases showing SCGB2A2

Licensable Technologiesfor SCGB2A2

Servicesfor SCGB2A2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for SCGB2A2

Summaries
for SCGB2A2

Genomic Location
for SCGB2A2

Proteins
for SCGB2A2

Protein Domains/
Families
for SCGB2A2

Gene Function
for SCGB2A2

Pathways & Interactions
for SCGB2A2

Drugs & Compounds
for SCGB2A2

Transcripts
for SCGB2A2

Expression
for SCGB2A2

Orthologs
for SCGB2A2

Paralogs
for SCGB2A2

SNPs/Variants
for SCGB2A2

Disorders & Mutations
for SCGB2A2

Medical News
for SCGB2A2

Publications
for SCGB2A2

Licensable Technologies
for SCGB2A2

Services
for SCGB2A2