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SCGB1D5P Gene(Pseudogene)

Secretoglobin Family 1D Member 5, Pseudogene

GCID:
GC04M165517
GIFtS:
9
Genes Participants
UDN Logo

Aliases for SCGB1D5P Gene

Subcategory (RNA class) for SCGB1D5P Gene

lncRNA

Aliases for SCGB1D5P Gene

  • Secretoglobin Family 1D Member 5, Pseudogene 2 3 5
  • Secretoglobin, Family 1D, Member 1 Pseudogene 1 2 3
  • SCGB1D1P1 3

External Ids for SCGB1D5P Gene

ORGUL Members for SCGB1D5P Gene

Previous HGNC Symbols for SCGB1D5P Gene

  • SCGB1D1P1

Previous GeneCards Identifiers for SCGB1D5P Gene

  • GC04M166440

Summaries for SCGB1D5P Gene

GeneCards Summary for SCGB1D5P Gene

SCGB1D5P (Secretoglobin Family 1D Member 5, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SCGB1D5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB1D5P Gene

Genomics for SCGB1D5P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SCGB1D5P Gene

Promoters and enhancers for SCGB1D5P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04I165506 Enhancer 0.5 ENCODE 0.4 +11.0 10997 0.1 FOXA2 CEBPB ZNF384 BCL6 LOC105377520 SCGB1D5P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCGB1D5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCGB1D5P Gene

Genomic Locations for SCGB1D5P Gene
chr4:165,517,255-165,517,501
(GRCh38/hg38)
Size:
247 bases
Orientation:
Minus strand
chr4:166,438,407-166,438,653
(GRCh37/hg19)

Genomic View for SCGB1D5P Gene

Genes around SCGB1D5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1D5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1D5P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SCGB1D5P Gene

Proteins for SCGB1D5P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SCGB1D5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB1D5P Gene

Domains & Families for SCGB1D5P Gene

Gene Families for SCGB1D5P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCGB1D5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCGB1D5P Gene

Function for SCGB1D5P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB1D5P Gene

Localization for SCGB1D5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB1D5P Gene

Pathways & Interactions for SCGB1D5P Gene

SuperPathways for SCGB1D5P Gene

PathCards logo More details on SuperPathways for SCGB1D5P
No Data Available

Interacting Proteins for SCGB1D5P Gene

Gene Ontology (GO) - Biological Process for SCGB1D5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCGB1D5P Gene

Drugs & Compounds for SCGB1D5P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SCGB1D5P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SCGB1D5P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1D5P Gene

No ASD Table

Relevant External Links for SCGB1D5P Gene

GeneLoc Exon Structure for
SCGB1D5P
ECgene alternative splicing isoforms for
SCGB1D5P

Expression for SCGB1D5P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB1D5P Gene

mRNA expression in normal human tissues for SCGB1D5P Gene
mRNA expression by GTEx for SCGB1D5P Gene

NURSA nuclear receptor signaling pathways regulating expression of SCGB1D5P Gene:

SCGB1D5P
genes like me logo Genes that share expression patterns with SCGB1D5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB1D5P Gene

Orthologs for SCGB1D5P Gene

Evolution for SCGB1D5P Gene

ENSEMBL:
Gene Tree for SCGB1D5P (if available)
TreeFam:
Gene Tree for SCGB1D5P (if available)

No data available for Orthologs for SCGB1D5P Gene

Paralogs for SCGB1D5P Gene

No data available for Paralogs for SCGB1D5P Gene

Variants for SCGB1D5P Gene

Additional Variant Information for SCGB1D5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB1D5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCGB1D5P Gene

Disorders for SCGB1D5P Gene

No disorders were found for SCGB1D5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCGB1D5P Gene

Publications for SCGB1D5P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 58

Products for SCGB1D5P Gene

Sources for SCGB1D5P Gene

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