Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCGB1D1 Gene

Aliases for SCGB1D1 Gene

  • Secretoglobin Family 1D Member 1 2 3 5
  • Lipophilin A (Uteroglobin Family Member) 2 3
  • Prostatein-Like Lipophilin A 2 3
  • Lipophilin-A 3 4
  • LPNA 3 4
  • LIPHA 4
  • LIPA 3
  • LPHA 3

External Ids for SCGB1D1 Gene

Previous GeneCards Identifiers for SCGB1D1 Gene

  • GC11P064471
  • GC11P063533
  • GC11P061733
  • GC11P061714
  • GC11P061957
  • GC11P058286

Summaries for SCGB1D1 Gene

Entrez Gene Summary for SCGB1D1 Gene

  • The protein encoded by this gene is a member of the lipophilin subfamily, part of the uteroglobin superfamily, and is an ortholog of prostatein, the major secretory glycoprotein of the rat ventral prostate gland. This gene product represents one component of a heterodimeric molecule present in human tears whose elution profile is consistent with prostatein, a tetrameric molecule composed of three peptide components in heterodimers. Assuming that human lipophilins are the functional counterparts of prostatein, they may be transcriptionally regulated by steroid hormones, with the ability to bind androgens, other steroids and possibly bind and concentrate estramustine, a chemotherapeutic agent widely used for prostate cancer. Although the gene has been reported to be on chromosome 15, this sequence appears to be from a cluster of genes on chromosome 11 that includes mammaglobin 2. [provided by RefSeq, Jul 2008]

GeneCards Summary for SCGB1D1 Gene

SCGB1D1 (Secretoglobin Family 1D Member 1) is a Protein Coding gene. Diseases associated with SCGB1D1 include Leber Congenital Amaurosis 17. Gene Ontology (GO) annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is SCGB1D2.

UniProtKB/Swiss-Prot for SCGB1D1 Gene

  • May bind androgens and other steroids, may also bind estramustine, a chemotherapeutic agent used for prostate cancer. May be under transcriptional regulation of steroid hormones.

Additional gene information for SCGB1D1 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB1D1 Gene

Genomics for SCGB1D1 Gene

GeneHancer (GH) Regulatory Elements for SCGB1D1 Gene

Promoters and enhancers for SCGB1D1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I062190 Promoter 0.5 EPDnew 550.8 0.0 -19 0.1 SCGB1D1 EEF1DP8
GH11I062208 Promoter 0.8 EPDnew 0.4 +18.4 18438 0.1 CTCF ZSCAN21 ZNF512 PRDM10 SCGB2A1 SCGB1D1
GH11I062171 Enhancer 0.7 ENCODE 0.4 -18.8 -18842 0.2 MEIS2 CTCF BMI1 RAD21 RFX5 TEAD3 CTBP1 ZBTB48 ZNF143 SMC3 EEF1DP8 SCGB1D1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCGB1D1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCGB1D1 gene promoter:

Genomic Locations for SCGB1D1 Gene

Genomic Locations for SCGB1D1 Gene
3,324 bases
Plus strand

Genomic View for SCGB1D1 Gene

Genes around SCGB1D1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1D1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB1D1 Gene

Proteins for SCGB1D1 Gene

  • Protein details for SCGB1D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Secretoglobin family 1D member 1
    Protein Accession:

    Protein attributes for SCGB1D1 Gene

    90 amino acids
    Molecular mass:
    9898 Da
    Quaternary structure:
    • Heterodimer of a lipophilin A and a lipophilin C (mammaglobin B) monomer associated head to head.

neXtProt entry for SCGB1D1 Gene

Post-translational modifications for SCGB1D1 Gene

No Post-translational modifications

Other Protein References for SCGB1D1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SCGB1D1 Gene

Domains & Families for SCGB1D1 Gene

Gene Families for SCGB1D1 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for SCGB1D1 Gene

Suggested Antigen Peptide Sequences for SCGB1D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the secretoglobin family. Lipophilin subfamily.
  • Belongs to the secretoglobin family. Lipophilin subfamily.
genes like me logo Genes that share domains with SCGB1D1: view

Function for SCGB1D1 Gene

Molecular function for SCGB1D1 Gene

UniProtKB/Swiss-Prot Function:
May bind androgens and other steroids, may also bind estramustine, a chemotherapeutic agent used for prostate cancer. May be under transcriptional regulation of steroid hormones.

Phenotypes From GWAS Catalog for SCGB1D1 Gene

Gene Ontology (GO) - Molecular Function for SCGB1D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046982 protein heterodimerization activity IDA 9720917
genes like me logo Genes that share ontologies with SCGB1D1: view
genes like me logo Genes that share phenotypes with SCGB1D1: view

miRNA for SCGB1D1 Gene

miRTarBase miRNAs that target SCGB1D1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCGB1D1 Gene

Localization for SCGB1D1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCGB1D1 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCGB1D1 gene
Compartment Confidence
extracellular 5
lysosome 1

Gene Ontology (GO) - Cellular Components for SCGB1D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA,TAS 9720917
genes like me logo Genes that share ontologies with SCGB1D1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SCGB1D1 Gene

Pathways & Interactions for SCGB1D1 Gene

SuperPathways for SCGB1D1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCGB1D1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCGB1D1 Gene

Drugs & Compounds for SCGB1D1 Gene

No Compound Related Data Available

Transcripts for SCGB1D1 Gene

mRNA/cDNA for SCGB1D1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCGB1D1 Gene

Secretoglobin, family 1D, member 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1D1 Gene

No ASD Table

Relevant External Links for SCGB1D1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCGB1D1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB1D1 Gene

Protein differential expression in normal tissues from HIPED for SCGB1D1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SCGB1D1 Gene

Protein tissue co-expression partners for SCGB1D1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCGB1D1 Gene:


SOURCE GeneReport for Unigene cluster for SCGB1D1 Gene:


mRNA Expression by UniProt/SwissProt for SCGB1D1 Gene:

Tissue specificity: Expressed in lachrymal gland, thymus, kidney, testis, ovary and salivary gland.

Evidence on tissue expression from TISSUES for SCGB1D1 Gene

  • Thyroid gland(4)
genes like me logo Genes that share expression patterns with SCGB1D1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB1D1 Gene

Orthologs for SCGB1D1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCGB1D1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCGB1D1 33 34
  • 99.26 (n)
(Canis familiaris)
Mammalia -- 34
  • 45 (a)
-- 34
  • 44 (a)
(Bos Taurus)
Mammalia SCGB1D 34
  • 44 (a)
Species where no ortholog for SCGB1D1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCGB1D1 Gene

Gene Tree for SCGB1D1 (if available)
Gene Tree for SCGB1D1 (if available)

Paralogs for SCGB1D1 Gene

Paralogs for SCGB1D1 Gene

(2) SIMAP similar genes for SCGB1D1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCGB1D1: view

Variants for SCGB1D1 Gene

Sequence variations from dbSNP and Humsavar for SCGB1D1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000071212 -- 62,193,135(+) C/T intron_variant
rs1000499068 -- 62,189,657(+) G/A upstream_transcript_variant
rs1000960646 -- 62,193,310(+) G/A intron_variant
rs1001103529 -- 62,190,685(+) G/A intron_variant
rs1001263317 -- 62,190,834(+) T/C intron_variant

Variation tolerance for SCGB1D1 Gene

Residual Variation Intolerance Score: 75% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.31; 6.89% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SCGB1D1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SCGB1D1 Gene

Disorders for SCGB1D1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCGB1D1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
leber congenital amaurosis 17
  • lca17
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SCGB1D1

genes like me logo Genes that share disorders with SCGB1D1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCGB1D1 Gene

Publications for SCGB1D1 Gene

  1. Lipophilins: human peptides homologous to rat prostatein. (PMID: 10066439) Zhao C … Lehrer RI (Biochemical and biophysical research communications 1999) 2 3 4 22 58
  2. Lipophilin, a novel heterodimeric protein of human tears. (PMID: 9720917) Lehrer RI … Glasgow BJ (FEBS letters 1998) 2 3 4 22 58
  3. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for SCGB1D1 Gene

Sources for SCGB1D1 Gene

Loading form....