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Aliases for SCGB1B2P Gene

Aliases for SCGB1B2P Gene

  • Secretoglobin Family 1B Member 2, Pseudogene 2 3 5
  • CTD-2378H7.2 3
  • SCGB4A1P 3

External Ids for SCGB1B2P Gene

Previous GeneCards Identifiers for SCGB1B2P Gene

  • GC19M035068

Summaries for SCGB1B2P Gene

GeneCards Summary for SCGB1B2P Gene

SCGB1B2P (Secretoglobin Family 1B Member 2, Pseudogene) is a Pseudogene.

Additional gene information for SCGB1B2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB1B2P Gene

Genomics for SCGB1B2P Gene

Regulatory Elements for SCGB1B2P Gene

Enhancers for SCGB1B2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H035430 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -853.5 -853506 1 PKNOX1 ZNF280D MAFG ZNF518A ZNF610 ZNF169 KDM1A ZNF548 SETDB1 ZNF558 NFKBID ZNF792 FFAR2 ZFP14 RBM42 TYROBP KMT2B KRTDAP DMKN HAUS5
GH19H034594 0.4 ENCODE 0.4 -17.2 -17170 0 HNF4A ZNF433 ZNF599 ENSG00000271049 TMEM147-AS1 SCGB1B2P GC19M034620 GC19M034621
GH19H034609 0.3 FANTOM5 0.3 -32.1 -32055 0 ZNF181 CHST8 ZNF302 GC19M034620 GC19M034621 SCGB1B2P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCGB1B2P on UCSC Golden Path with GeneCards custom track

Genomic Location for SCGB1B2P Gene

Chromosome:
19
Start:
34,576,733 bp from pter
End:
34,577,701 bp from pter
Size:
969 bases
Orientation:
Minus strand

Genomic View for SCGB1B2P Gene

Genes around SCGB1B2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1B2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1B2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB1B2P Gene

Proteins for SCGB1B2P Gene

Post-translational modifications for SCGB1B2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCGB1B2P Gene

Domains & Families for SCGB1B2P Gene

Gene Families for SCGB1B2P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCGB1B2P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCGB1B2P Gene

Function for SCGB1B2P Gene

Phenotypes From GWAS Catalog for SCGB1B2P Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCGB1B2P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB1B2P Gene

Localization for SCGB1B2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCGB1B2P Gene

Pathways & Interactions for SCGB1B2P Gene

SuperPathways for SCGB1B2P Gene

No Data Available

Interacting Proteins for SCGB1B2P Gene

Gene Ontology (GO) - Biological Process for SCGB1B2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCGB1B2P Gene

Drugs & Compounds for SCGB1B2P Gene

No Compound Related Data Available

Transcripts for SCGB1B2P Gene

mRNA/cDNA for SCGB1B2P Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCGB1B2P Gene

Secretoglobin, family 1B, member 2, pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCGB1B2P
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1B2P Gene

No ASD Table

Relevant External Links for SCGB1B2P Gene

GeneLoc Exon Structure for
SCGB1B2P
ECgene alternative splicing isoforms for
SCGB1B2P

Expression for SCGB1B2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCGB1B2P Gene

mRNA differential expression in normal tissues according to GTEx for SCGB1B2P Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.4) and Skin - Not Sun Exposed (Suprapubic) (x14.2).

NURSA nuclear receptor signaling pathways regulating expression of SCGB1B2P Gene:

SCGB1B2P

SOURCE GeneReport for Unigene cluster for SCGB1B2P Gene:

Hs.686754
genes like me logo Genes that share expression patterns with SCGB1B2P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCGB1B2P Gene

Orthologs for SCGB1B2P Gene

Evolution for SCGB1B2P Gene

ENSEMBL:
Gene Tree for SCGB1B2P (if available)
TreeFam:
Gene Tree for SCGB1B2P (if available)

No data available for Orthologs for SCGB1B2P Gene

Paralogs for SCGB1B2P Gene

No data available for Paralogs for SCGB1B2P Gene

Variants for SCGB1B2P Gene

Sequence variations from dbSNP and Humsavar for SCGB1B2P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000081389 -- 34,613,281(+) TTCAG(A/T)AGAGA intron-variant
rs1000099324 -- 34,655,141(+) GACCC(C/T)TCCTC intron-variant
rs1000217505 -- 34,658,877(+) CCATG(C/T)GAAAA intron-variant
rs1000219234 -- 34,605,684(+) CCAGG(C/T)TCAAG intron-variant
rs1000267270 -- 34,576,697(+) CCCAC(G/T)TCCCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SCGB1B2P Gene

Variant ID Type Subtype PubMed ID
esv2718484 CNV deletion 23290073
esv3329051 OTHER inversion 20981092
esv5547 OTHER inversion 19470904

Relevant External Links for SCGB1B2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB1B2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCGB1B2P Gene

Disorders for SCGB1B2P Gene

Relevant External Links for SCGB1B2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCGB1B2P

No disorders were found for SCGB1B2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCGB1B2P Gene

Publications for SCGB1B2P Gene

  1. Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. (PMID: 22155607) Jackson BC … Vasiliou V (Human genomics 2011) 2 3 60

Products for SCGB1B2P Gene

Sources for SCGB1B2P Gene

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