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Aliases for SCGB1A1 Gene

Aliases for SCGB1A1 Gene

  • Secretoglobin Family 1A Member 1 2 3 4 5
  • Clara Cell Phospholipid-Binding Protein 3 4
  • Clara Cells 10 KDa Secretory Protein 3 4
  • Urinary Protein 1 3 4
  • Urine Protein 1 3 4
  • Uteroglobin 2 3
  • CCPBP 3 4
  • CC10 3 4
  • CCSP 3 4
  • UP-1 3 4
  • UGB 3 4
  • UP1 3 4
  • Secretoglobin, Family 1A, Member 1 (Uteroglobin) 3
  • Uteroglobin (Clara-Cell Specific 10-KD Protein) 2
  • Blastokinin 3
  • CC16 3

External Ids for SCGB1A1 Gene

Previous HGNC Symbols for SCGB1A1 Gene

  • UGB

Previous GeneCards Identifiers for SCGB1A1 Gene

  • GC11P064700
  • GC11P063762
  • GC11P061961
  • GC11P061943
  • GC11P062188
  • GC11P058514

Summaries for SCGB1A1 Gene

Entrez Gene Summary for SCGB1A1 Gene

  • This gene encodes a member of the secretoglobin family of small secreted proteins. The encoded protein has been implicated in numerous functions including anti-inflammation, inhibition of phospholipase A2 and the sequestering of hydrophobic ligands. Defects in this gene are associated with a susceptibility to asthma. [provided by RefSeq, May 2010]

GeneCards Summary for SCGB1A1 Gene

SCGB1A1 (Secretoglobin Family 1A Member 1) is a Protein Coding gene. Diseases associated with SCGB1A1 include Bronchopulmonary Dysplasia and Paraquat Lung. Among its related pathways are Prostaglandin Synthesis and Regulation and FOXA1 transcription factor network. GO annotations related to this gene include binding and phospholipase A2 inhibitor activity.

UniProtKB/Swiss-Prot for SCGB1A1 Gene

  • Binds phosphatidylcholine, phosphatidylinositol, polychlorinated biphenyls (PCB) and weakly progesterone, potent inhibitor of phospholipase A2.

Gene Wiki entry for SCGB1A1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCGB1A1 Gene

Genomics for SCGB1A1 Gene

Regulatory Elements for SCGB1A1 Gene

Enhancers for SCGB1A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F062551 1.9 FANTOM5 Ensembl ENCODE 10.7 +152.1 152074 12.9 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YBX1 FEZF1 DMAP1 EML3 TTC9C TAF6L HNRNPUL2 EEF1G TUT1 MTA2 ENSG00000254964 LOC102723765 SCGB1A1
GH11F062424 1.7 FANTOM5 Ensembl ENCODE 11.4 +25.4 25356 12.3 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A ZNF2 YY1 ZNF143 FOS ASRGL1 EEF1G TTC9C LOC102723765 SCGB1A1 ENSG00000255126 ENSG00000250659 LOC101927617 AHNAK TUT1
GH11F062496 1.7 FANTOM5 Ensembl ENCODE 11.4 +98.1 98102 13.5 PKNOX1 MLX ARID4B SIN3A DMAP1 YBX1 ZNF143 FOS DEK SP5 EEF1G NXF1 INTS5 METTL12 STX5 MTA2 AHNAK SNHG1 LOC105369332 ENSG00000250659
GH11F062443 1.2 FANTOM5 Ensembl ENCODE 12 +39.9 39908 3.6 NRF1 BHLHE40 KLF17 SIN3A REST EBF1 RARA POLR2A ASRGL1 AHNAK SCGB1A1 ENSG00000255126 ENSG00000250659 LOC101927617 EEF1G TUT1 TTC9C FTH1
GH11F062380 1 Ensembl ENCODE 11.6 -24.0 -24006 0.6 CTCF SAP130 ARID4B ZNF48 RAD21 RARA RFX5 ZFHX2 POLR2A SMC3 SCGB1A1 ASRGL1 PIR59932 GC11P062385 RCC2P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCGB1A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCGB1A1 Gene

Chromosome:
11
Start:
62,405,103 bp from pter
End:
62,423,206 bp from pter
Size:
18,104 bases
Orientation:
Plus strand

Genomic View for SCGB1A1 Gene

Genes around SCGB1A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCGB1A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCGB1A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCGB1A1 Gene

Proteins for SCGB1A1 Gene

  • Protein details for SCGB1A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11684-UTER_HUMAN
    Recommended name:
    Uteroglobin
    Protein Accession:
    P11684
    Secondary Accessions:
    • B2R5F2
    • Q6FHH3
    • Q9UCM2
    • Q9UCM4

    Protein attributes for SCGB1A1 Gene

    Size:
    91 amino acids
    Molecular mass:
    9994 Da
    Quaternary structure:
    • Homodimer; antiparallel disulfide-linked.

neXtProt entry for SCGB1A1 Gene

Post-translational modifications for SCGB1A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SCGB1A1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for SCGB1A1 (Uteroglobin/SCGB1A1)

No data available for DME Specific Peptides for SCGB1A1 Gene

Domains & Families for SCGB1A1 Gene

Gene Families for SCGB1A1 Gene

Protein Domains for SCGB1A1 Gene

Suggested Antigen Peptide Sequences for SCGB1A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P11684

UniProtKB/Swiss-Prot:

UTER_HUMAN :
  • Belongs to the secretoglobin family.
Family:
  • Belongs to the secretoglobin family.
genes like me logo Genes that share domains with SCGB1A1: view

Function for SCGB1A1 Gene

Molecular function for SCGB1A1 Gene

UniProtKB/Swiss-Prot Function:
Binds phosphatidylcholine, phosphatidylinositol, polychlorinated biphenyls (PCB) and weakly progesterone, potent inhibitor of phospholipase A2.

Gene Ontology (GO) - Molecular Function for SCGB1A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 18243143
GO:0019834 phospholipase A2 inhibitor activity IEA --
GO:0097160 polychlorinated biphenyl binding IEA --
genes like me logo Genes that share ontologies with SCGB1A1: view
genes like me logo Genes that share phenotypes with SCGB1A1: view

Animal Models for SCGB1A1 Gene

MGI Knock Outs for SCGB1A1:

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for SCGB1A1 Gene

Localization for SCGB1A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCGB1A1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCGB1A1 gene
Compartment Confidence
extracellular 5
nucleus 3
endoplasmic reticulum 3
cytoskeleton 2
cytosol 1

Gene Ontology (GO) - Cellular Components for SCGB1A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IEA --
GO:0005622 intracellular IEA --
GO:0005635 nuclear envelope IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SCGB1A1: view

Pathways & Interactions for SCGB1A1 Gene

genes like me logo Genes that share pathways with SCGB1A1: view

Pathways by source for SCGB1A1 Gene

Gene Ontology (GO) - Biological Process for SCGB1A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0007165 signal transduction IEA --
GO:0007565 female pregnancy NAS 10587371
GO:0007566 embryo implantation TAS 10587371
GO:0009410 response to xenobiotic stimulus IEA --
genes like me logo Genes that share ontologies with SCGB1A1: view

No data available for SIGNOR curated interactions for SCGB1A1 Gene

Drugs & Compounds for SCGB1A1 Gene

(16) Drugs for SCGB1A1 Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
4,4'-BIS([H]METHYLSULFONYL)-2,2',5,5'-TETRACHLOROBIPHENYL Experimental Pharma Target 0

(16) Additional Compounds for SCGB1A1 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
PC(18:1(9Z)e/2:0)
  • (2-acetyloxy-3-octadec-9-enoxypropyl) 2-trimethylazaniumylethyl phosphate
  • 2-Acetyl-1-(9Z-octadecenyl)-sn-glycero-3-phosphocholine
  • PC(O-18:1(9Z)/2:0)
Phosphatidylcholines Group A
  • (Z,Z)-(1)-(7-Oleoyl-4-oxido-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-enyl)trimethylammonium 4-oxide
  • (Z,Z)-4-hydroxy-N,N,N-trimethyl-10-oxo-7-[(1-oxo-9-octadecenyl)oxy]-3,5,9-Trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide hydroxide inner salt
  • 1,2-Dioleoyl-rac-glycero-3-phosphocholine
  • 1,2-Dioleoylglycerol-3-phosphorylcholine
  • 1,2-Dioleoylglyceryl-3-phosphorylcholine
68737-67-7
Phosphatidylcholines Group B
  • 1-(1-Enyl-palmitoyl)-2-stearidonoyl-sn-glycero-3-phosphocholine
  • GPCho(16:0/18:4)
  • GPCho(16:0/18:4n3)
  • GPCho(16:0/18:4w3)
  • GPCho(34:4)
88542-95-4
genes like me logo Genes that share compounds with SCGB1A1: view

Transcripts for SCGB1A1 Gene

mRNA/cDNA for SCGB1A1 Gene

Unigene Clusters for SCGB1A1 Gene

Secretoglobin, family 1A, member 1 (uteroglobin):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCGB1A1 Gene

No ASD Table

Relevant External Links for SCGB1A1 Gene

GeneLoc Exon Structure for
SCGB1A1
ECgene alternative splicing isoforms for
SCGB1A1

Expression for SCGB1A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCGB1A1 Gene

mRNA differential expression in normal tissues according to GTEx for SCGB1A1 Gene

This gene is overexpressed in Lung (x49.8).

Protein differential expression in normal tissues from HIPED for SCGB1A1 Gene

This gene is overexpressed in Urine (30.9), Nasal epithelium (22.2), and Neutrophil (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SCGB1A1 Gene



NURSA nuclear receptor signaling pathways regulating expression of SCGB1A1 Gene:

SCGB1A1

SOURCE GeneReport for Unigene cluster for SCGB1A1 Gene:

Hs.523732

mRNA Expression by UniProt/SwissProt for SCGB1A1 Gene:

P11684-UTER_HUMAN
Tissue specificity: Clara cells (nonciliated cells of the surface epithelium of the pulmonary airways).
genes like me logo Genes that share expression patterns with SCGB1A1: view

Primer Products

No data available for Protein tissue co-expression partners for SCGB1A1 Gene

Orthologs for SCGB1A1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCGB1A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCGB1A1 34 35
  • 98.53 (n)
dog
(Canis familiaris)
Mammalia SCGB1A1 34 35
  • 75.93 (n)
mouse
(Mus musculus)
Mammalia Scgb1a1 34 16 35
  • 70.74 (n)
rat
(Rattus norvegicus)
Mammalia Scgb1a1 34
  • 70 (n)
cow
(Bos Taurus)
Mammalia SCGB1A1 35
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCGB1A1 35
  • 34 (a)
OneToOne
Species where no ortholog for SCGB1A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCGB1A1 Gene

ENSEMBL:
Gene Tree for SCGB1A1 (if available)
TreeFam:
Gene Tree for SCGB1A1 (if available)

Paralogs for SCGB1A1 Gene

(1) SIMAP similar genes for SCGB1A1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SCGB1A1: view

No data available for Paralogs for SCGB1A1 Gene

Variants for SCGB1A1 Gene

Sequence variations from dbSNP and Humsavar for SCGB1A1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs41364547 Uncertain significance 62,419,058(+) GAGAC(A/G)GAACC intron-variant, utr-variant-5-prime
rs10590375 -- 62,421,454(+) ATGGC(-/TTCTT)TTCTT intron-variant
rs10676203 -- 62,421,526(+) TGCTT(-/GCTT/GCTTGCTTGCTTGCTT)TTTGA intron-variant
rs10897271 -- 62,419,714(+) ATTTC(C/T)GTCCT intron-variant
rs112007567 -- 62,417,282(+) TTTTT(C/T)TGAGA intron-variant, upstream-variant-2KB

Variation tolerance for SCGB1A1 Gene

Residual Variation Intolerance Score: 59.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.12; 22.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SCGB1A1 Gene

Human Gene Mutation Database (HGMD)
SCGB1A1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCGB1A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SCGB1A1 Gene

Disorders for SCGB1A1 Gene

MalaCards: The human disease database

(19) MalaCards diseases for SCGB1A1 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
bronchopulmonary dysplasia
  • bpd
paraquat lung
  • paraquat induced lung disease
bronchiolitis obliterans
  • bronchiolitis exudativa
silicosis
  • pneumoconiosis due to silicates
meconium aspiration syndrome
  • meconium aspiration
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SCGB1A1

Genetic Association Database (GAD)
SCGB1A1
Human Genome Epidemiology (HuGE) Navigator
SCGB1A1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCGB1A1
genes like me logo Genes that share disorders with SCGB1A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCGB1A1 Gene

Publications for SCGB1A1 Gene

  1. Human CC10, the homologue of rabbit uteroglobin: genomic cloning, chromosomal localization and expression in endometrial cell lines. (PMID: 1284526) Wolf M. … Suske G. (Hum. Mol. Genet. 1992) 2 3 4 22 64
  2. Cross-sectional and longitudinal association of the secretoglobin 1A1 gene A38G polymorphism with asthma phenotype in the Perth Infant Asthma Follow-up cohort. (PMID: 19128353) Laing I.A. … Le SouAf P.N. (Clin. Exp. Allergy 2009) 3 22 46 64
  3. Infant frequent wheezing correlated to Clara cell protein 10 (CC10) polymorphism and concentration, but not allergy sensitization, in a perinatal cohort study. (PMID: 17716718) Yang K.D. … Huang S.K. (J. Allergy Clin. Immunol. 2007) 3 22 46 64
  4. No association between the Clara cell secretory protein (CC16) gene polymorphism and personality traits. (PMID: 16764982) Tochigi M. … Sasaki T. (Prog. Neuropsychopharmacol. Biol. Psychiatry 2006) 3 22 46 64
  5. Acute asthma in children: Relationships among CD14 and CC16 genotypes, plasma levels, and severity. (PMID: 16387800) Martin A.C. … LeSouAf P.N. (Am. J. Respir. Crit. Care Med. 2006) 3 22 46 64

Products for SCGB1A1 Gene

Sources for SCGB1A1 Gene