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Aliases for SCG3 Gene

Aliases for SCG3 Gene

  • Secretogranin III 2 3 4 5
  • SGIII 3 4
  • Secretogranin-3 3

External Ids for SCG3 Gene

Previous GeneCards Identifiers for SCG3 Gene

  • GC15P047530
  • GC15P045020
  • GC15P049552
  • GC15P049689
  • GC15P049760
  • GC15P051973
  • GC15P028804

Summaries for SCG3 Gene

Entrez Gene Summary for SCG3 Gene

  • The protein encoded by this gene is a member of the chromogranin/secretogranin family of neuroendocrine secretory proteins. Granins may serve as precursors for biologically active peptides. Some granins have been shown to function as helper proteins in sorting and proteolytic processing of prohormones; however, the function of this protein is unknown. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]

GeneCards Summary for SCG3 Gene

SCG3 (Secretogranin III) is a Protein Coding gene. Diseases associated with SCG3 include Obesity. Among its related pathways are Response to elevated platelet cytosolic Ca2+. GO annotations related to this gene include poly(A) RNA binding.

Gene Wiki entry for SCG3 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCG3 Gene

Genomics for SCG3 Gene

Regulatory Elements for SCG3 Gene

Enhancers for SCG3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F051629 0.7 Ensembl ENCODE 24 -51.7 -51723 1.3 GATA2 CEBPA HMBOX1 CEBPB ZNF24 SPI1 SCG3 DMXL2 LOC105370816
GH15F051620 0.8 FANTOM5 ENCODE 22.5 -58.9 -58902 4.4 PKNOX1 ARID4B SIN3A DMAP1 ZNF416 ZNF263 JUNB KAT8 MEF2D RFX3 DMXL2 SCG3 LYSMD2 TRPM7 ENSG00000260618 MAPK6 TMOD2 TMOD3 ENSG00000259678 GC15M056093
GH15F051707 1 FANTOM5 ENCODE 18.9 +26.9 26850 2.4 ZNF362 ZBTB33 CHAMP1 DMXL2 SCG3 TMOD2 LYSMD2 MAPK6 TMOD3 ENSG00000259296 ENSG00000259241
GH15F051681 0.2 ENCODE 13 +0.2 241 0.8 PKNOX1 ATF1 MLX ZFP64 SIN3A ARID4B ZNF48 SLC30A9 GLIS2 ELK1 LOC100129973 SCG3 ENSG00000259327 LYSMD2 ENSG00000259241
GH15F051672 1.3 FANTOM5 Ensembl ENCODE 12.6 -9.1 -9053 0.6 SMARCE1 LEF1 RNF2 NR2F1 JUND FOXK2 SMARCA4 IKZF1 SPI1 SCG3 LYSMD2 TMOD2 DMXL2 MAPK6 LOC105370816
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCG3 on UCSC Golden Path with GeneCards custom track

Promoters for SCG3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001795019 347 1000 PKNOX1 ATF1 MLX ZFP64 SIN3A ARID4B ZNF48 SLC30A9 GLIS2 ELK1

Genomic Location for SCG3 Gene

51,681,353 bp from pter
51,721,031 bp from pter
39,679 bases
Plus strand

Genomic View for SCG3 Gene

Genes around SCG3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCG3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCG3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCG3 Gene

Proteins for SCG3 Gene

  • Protein details for SCG3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein Accession:
    Secondary Accessions:
    • A8K2B0
    • B3KQP6
    • B4DK99
    • F5H3R8
    • Q96C83
    • Q96GE8
    • Q9Y6G7

    Protein attributes for SCG3 Gene

    468 amino acids
    Molecular mass:
    53005 Da
    Quaternary structure:
    • Interacts with CHGA.

    Alternative splice isoforms for SCG3 Gene


neXtProt entry for SCG3 Gene

Post-translational modifications for SCG3 Gene

  • O-glycosylated.
  • Glycosylation at Asn 68, Thr 144, Thr 216, Thr 231, Asn 346, and Ser 359
  • Modification sites at PhosphoSitePlus

Other Protein References for SCG3 Gene

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for SCG3

No data available for DME Specific Peptides for SCG3 Gene

Domains & Families for SCG3 Gene

Gene Families for SCG3 Gene

Protein Domains for SCG3 Gene


Suggested Antigen Peptide Sequences for SCG3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCG3: view

No data available for UniProtKB/Swiss-Prot for SCG3 Gene

Function for SCG3 Gene

Gene Ontology (GO) - Molecular Function for SCG3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with SCG3: view
genes like me logo Genes that share phenotypes with SCG3: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SCG3

miRNA for SCG3 Gene

miRTarBase miRNAs that target SCG3

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCG3 Gene

Localization for SCG3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCG3 Gene

Cytoplasmic vesicle, secretory vesicle lumen. Cytoplasmic vesicle, secretory vesicle membrane; Peripheral membrane protein. Secreted. Note=Associated with the secretory granule membrane through direct binding to cholesterol-enriched lipid rafts in intragranular conditions (By similarity). Neuroendocrine and endocrine secretory granules. {ECO:0000250}.

Subcellular locations from

Jensen Localization Image for SCG3 Gene COMPARTMENTS Subcellular localization image for SCG3 gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 2
golgi apparatus 2
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SCG3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0016020 membrane IEA --
GO:0030658 transport vesicle membrane IEA --
GO:0031410 cytoplasmic vesicle IEA,IBA --
GO:0034774 secretory granule lumen TAS --
genes like me logo Genes that share ontologies with SCG3: view

Pathways & Interactions for SCG3 Gene

genes like me logo Genes that share pathways with SCG3: view

Interacting Proteins for SCG3 Gene

Gene Ontology (GO) - Biological Process for SCG3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002576 platelet degranulation TAS --
genes like me logo Genes that share ontologies with SCG3: view

No data available for SIGNOR curated interactions for SCG3 Gene

Drugs & Compounds for SCG3 Gene

(1) Drugs for SCG3 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with SCG3: view

Transcripts for SCG3 Gene

Unigene Clusters for SCG3 Gene

Secretogranin III:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCG3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP2: -

Relevant External Links for SCG3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCG3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCG3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SCG3 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x6.8), Brain - Cortex (x5.8), Brain - Anterior cingulate cortex (BA24) (x5.7), and Brain - Amygdala (x4.5).

Protein differential expression in normal tissues from HIPED for SCG3 Gene

This gene is overexpressed in Cerebrospinal fluid (54.8) and Nasal epithelium (8.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SCG3 Gene

Protein tissue co-expression partners for SCG3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SCG3 Gene:


SOURCE GeneReport for Unigene cluster for SCG3 Gene:


mRNA Expression by UniProt/SwissProt for SCG3 Gene:

Tissue specificity: Expressed in brain, heart, kidney, liver and skeletal muscle.
genes like me logo Genes that share expression patterns with SCG3: view

Primer Products

Orthologs for SCG3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCG3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCG3 34 35
  • 99.72 (n)
(Canis familiaris)
Mammalia SCG3 34 35
  • 92.2 (n)
(Bos Taurus)
Mammalia SCG3 34 35
  • 90.46 (n)
(Mus musculus)
Mammalia Scg3 34 16 35
  • 86.25 (n)
(Rattus norvegicus)
Mammalia Scg3 34
  • 85.54 (n)
(Monodelphis domestica)
Mammalia SCG3 35
  • 61 (a)
(Ornithorhynchus anatinus)
Mammalia SCG3 35
  • 41 (a)
(Gallus gallus)
Aves SCG3 34 35
  • 73.22 (n)
(Anolis carolinensis)
Reptilia SCG3 35
  • 63 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia scg3 34
  • 66.52 (n)
Str.14123 34
African clawed frog
(Xenopus laevis)
Amphibia scg3-A 34
(Danio rerio)
Actinopterygii scg3 34 35
  • 61.83 (n)
zgc73236 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5512 34
Species where no ortholog for SCG3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCG3 Gene

Gene Tree for SCG3 (if available)
Gene Tree for SCG3 (if available)

Paralogs for SCG3 Gene

No data available for Paralogs for SCG3 Gene

Variants for SCG3 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for SCG3 Gene

Polymorphisms in the 5-flanking region and in intron 1 may have an effect on transcriptional activity and be associated with an increase in subcutaneous, but not visceral, fat area. Hence, may influence the risk of obesity.

Sequence variations from dbSNP and Humsavar for SCG3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001690 -- 51,719,158(+) gtcaa(A/C)tgggg intron-variant
rs1017678 -- 51,679,727(-) GGATC(A/G)TGTTA upstream-variant-2KB
rs10519314 -- 51,684,962(+) AGAAC(C/T)AGTGC intron-variant
rs10519315 -- 51,685,014(+) TCCAT(A/G)GCTAC intron-variant
rs10519316 -- 51,685,115(+) TGTCA(C/T)GTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCG3 Gene

Variant ID Type Subtype PubMed ID
esv3306226 CNV mobile element insertion 20981092
esv3401160 CNV insertion 20981092
nsv457139 CNV loss 19166990
nsv471243 CNV gain 18288195
nsv569407 CNV loss 21841781

Variation tolerance for SCG3 Gene

Residual Variation Intolerance Score: 35.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.71; 73.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SCG3 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

Disorders for SCG3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCG3 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
  • obesity, association with
- elite association - COSMIC cancer census association via MalaCards
Search SCG3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for SCG3

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SCG3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCG3 Gene

Publications for SCG3 Gene

  1. Functional single-nucleotide polymorphisms in the secretogranin III (SCG3) gene that form secretory granules with appetite-related neuropeptides are associated with obesity. (PMID: 17200173) Tanabe A. … Hotta K. (J. Clin. Endocrinol. Metab. 2007) 3 4 22 46 64
  2. LDL oxidation by THP-1 monocytes: implication of HNP-1, SgIII and DMT-1. (PMID: 19150442) He C. … Wu J. (Clin. Chim. Acta 2009) 3 22 64
  3. Measurements of secretogranins II, III, V and proconvertases 1/3 and 2 in plasma from patients with neuroendocrine tumours. (PMID: 18448176) Stridsberg M. … Janson E.T. (Regul. Pept. 2008) 3 22 64
  4. Characterization of the proteins released from activated platelets leads to localization of novel platelet proteins in human atherosclerotic lesions. (PMID: 14630798) Coppinger J.A. … Maguire P.B. (Blood 2004) 3 22 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for SCG3 Gene

  • Cloud-Clone Corp. Antibodies for SCG3
  • Cloud-Clone Corp. Proteins for SCG3
  • Cloud-Clone Corp Assay Kits for SCG3

Sources for SCG3 Gene

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