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Aliases for SCEL-AS1 Gene

Subcategory (RNA class) for SCEL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCEL-AS1 Gene

  • SCEL Antisense RNA 1 2 3 5
  • SCEL Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SCEL-AS1 Gene

Previous GeneCards Identifiers for SCEL-AS1 Gene

  • GC00U933659
  • GC13M078174

Summaries for SCEL-AS1 Gene

GeneCards Summary for SCEL-AS1 Gene

SCEL-AS1 (SCEL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SCEL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCEL-AS1 Gene

Genomics for SCEL-AS1 Gene

GeneHancer (GH) Regulatory Elements for SCEL-AS1 Gene

Promoters and enhancers for SCEL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I077515 Enhancer 1 FANTOM5 Ensembl ENCODE 10.7 +90.1 90122 1 JUN JUNB JUND POLR2A BCL11A IKZF1 NFATC1 ZNF24 ETV6 SCEL-AS1 SCEL LOC105370271
GH13I077751 Enhancer 0.9 ENCODE dbSUPER 10.8 -145.5 -145453 0.7 HDGF CTCF MAX MZF1 ZNF384 BRCA1 IRF4 RAD21 NFATC1 ZNF547 SCEL-AS1 GC13M077708 SLAIN1 EDNRB-AS1
GH13I077558 Enhancer 0.9 Ensembl ENCODE 10.6 +47.6 47633 0.6 SMAD1 NFIB BATF IRF4 CTBP1 GATA3 ETV6 IKZF2 RUNX3 JUNB SCEL-AS1 SCEL
GH13I077744 Promoter/Enhancer 0.8 EPDnew dbSUPER 10.7 -136.5 -136535 0.1 POLR2A SLAIN1 SCEL-AS1 GC13M077708 EDNRB-AS1
GH13I077584 Enhancer 0.2 FANTOM5 11 +22.3 22255 0.2 SLAIN1 SCEL-AS1 EDNRB MYCBP2 SCEL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCEL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCEL-AS1 Gene

Genomic Locations for SCEL-AS1 Gene
chr13:77,599,755-77,606,551
(GRCh38/hg38)
Size:
6,797 bases
Orientation:
Minus strand
chr13:78,173,890-78,180,686
(GRCh37/hg19)

Genomic View for SCEL-AS1 Gene

Genes around SCEL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCEL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCEL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCEL-AS1 Gene

Proteins for SCEL-AS1 Gene

Post-translational modifications for SCEL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCEL-AS1 Gene

Domains & Families for SCEL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCEL-AS1 Gene

Function for SCEL-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCEL-AS1 Gene

Localization for SCEL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCEL-AS1 Gene

Pathways & Interactions for SCEL-AS1 Gene

SuperPathways for SCEL-AS1 Gene

No Data Available

Interacting Proteins for SCEL-AS1 Gene

Gene Ontology (GO) - Biological Process for SCEL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCEL-AS1 Gene

Drugs & Compounds for SCEL-AS1 Gene

No Compound Related Data Available

Transcripts for SCEL-AS1 Gene

mRNA/cDNA for SCEL-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCEL-AS1 Gene

No ASD Table

Relevant External Links for SCEL-AS1 Gene

GeneLoc Exon Structure for
SCEL-AS1
ECgene alternative splicing isoforms for
SCEL-AS1

Expression for SCEL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCEL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SCEL-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x21.2), Skin - Sun Exposed (Lower leg) (x8.3), Skin - Not Sun Exposed (Suprapubic) (x7.8), Vagina (x6.0), and Cervix - Ectocervix (x4.1).
genes like me logo Genes that share expression patterns with SCEL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCEL-AS1 Gene

Orthologs for SCEL-AS1 Gene

Evolution for SCEL-AS1 Gene

ENSEMBL:
Gene Tree for SCEL-AS1 (if available)
TreeFam:
Gene Tree for SCEL-AS1 (if available)

No data available for Orthologs for SCEL-AS1 Gene

Paralogs for SCEL-AS1 Gene

No data available for Paralogs for SCEL-AS1 Gene

Variants for SCEL-AS1 Gene

Sequence variations from dbSNP and Humsavar for SCEL-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000429972 -- 77,602,529(-) A/T intron_variant
rs1001031863 -- 77,603,950(-) C/A intron_variant
rs1001511306 -- 77,606,792(-) T/C upstream_transcript_variant
rs1001838239 -- 77,605,308(-) C/G intron_variant
rs1001890649 -- 77,605,617(-) T/G intron_variant

Additional Variant Information for SCEL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCEL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCEL-AS1 Gene

Disorders for SCEL-AS1 Gene

Additional Disease Information for SCEL-AS1

No disorders were found for SCEL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCEL-AS1 Gene

Publications for SCEL-AS1 Gene

No publications were found for SCEL-AS1 Gene.

Products for SCEL-AS1 Gene

Sources for SCEL-AS1 Gene

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