Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCEL-AS1 Gene

Subcategory (RNA class) for SCEL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCEL-AS1 Gene

  • SCEL Antisense RNA 1 2 3 5
  • SCEL Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SCEL-AS1 Gene

Previous GeneCards Identifiers for SCEL-AS1 Gene

  • GC00U933659
  • GC13M078174

Summaries for SCEL-AS1 Gene

GeneCards Summary for SCEL-AS1 Gene

SCEL-AS1 (SCEL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCEL-AS1 Gene

Genomics for SCEL-AS1 Gene

Regulatory Elements for SCEL-AS1 Gene

Enhancers for SCEL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G077515 1.1 FANTOM5 Ensembl ENCODE 10.7 +90.1 90123 1.0 JUN JUNB EP300 JUND GATA2 EED IKZF1 ETV6 FOS SCEL-AS1 SCEL LOC105370271
GH13G077751 1 ENCODE dbSUPER 10.8 -145.5 -145453 0.7 HDGF CTCF WRNIP1 MAX ZNF384 BRCA1 RAD21 ZNF547 ZNF143 SMC3 SCEL-AS1 GC13M077708 EDNRB-AS1
GH13G077558 0.9 Ensembl ENCODE 10.5 +47.6 47633 0.6 MTA2 NFIB JUNB TBX21 CTBP1 GATA3 IKZF1 TARDBP EED NBN SCEL-AS1 SCEL
GH13G077749 0.5 dbSUPER 10.8 -143.7 -143678 2.2 JUND GATA2 FOS EP300 SLAIN1 SCEL-AS1 GC13M077708 EDNRB-AS1
GH13G077738 0.5 dbSUPER 10.7 -133.7 -133696 4.0 ZNF398 MAFK EP300 SCEL-AS1 GC13M077708 EDNRB-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCEL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCEL-AS1 Gene

Chromosome:
13
Start:
77,599,755 bp from pter
End:
77,606,551 bp from pter
Size:
6,797 bases
Orientation:
Minus strand

Genomic View for SCEL-AS1 Gene

Genes around SCEL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCEL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCEL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCEL-AS1 Gene

Proteins for SCEL-AS1 Gene

Post-translational modifications for SCEL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCEL-AS1 Gene

Domains & Families for SCEL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCEL-AS1 Gene

Function for SCEL-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCEL-AS1 Gene

Localization for SCEL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCEL-AS1 Gene

Pathways & Interactions for SCEL-AS1 Gene

SuperPathways for SCEL-AS1 Gene

No Data Available

Interacting Proteins for SCEL-AS1 Gene

Gene Ontology (GO) - Biological Process for SCEL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCEL-AS1 Gene

Drugs & Compounds for SCEL-AS1 Gene

No Compound Related Data Available

Transcripts for SCEL-AS1 Gene

mRNA/cDNA for SCEL-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCEL-AS1 Gene

No ASD Table

Relevant External Links for SCEL-AS1 Gene

GeneLoc Exon Structure for
SCEL-AS1
ECgene alternative splicing isoforms for
SCEL-AS1

Expression for SCEL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCEL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SCEL-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x21.2), Skin - Sun Exposed (Lower leg) (x8.3), Skin - Not Sun Exposed (Suprapubic) (x7.8), Vagina (x6.0), and Cervix - Ectocervix (x4.1).
genes like me logo Genes that share expression patterns with SCEL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCEL-AS1 Gene

Orthologs for SCEL-AS1 Gene

Evolution for SCEL-AS1 Gene

ENSEMBL:
Gene Tree for SCEL-AS1 (if available)
TreeFam:
Gene Tree for SCEL-AS1 (if available)

No data available for Orthologs for SCEL-AS1 Gene

Paralogs for SCEL-AS1 Gene

No data available for Paralogs for SCEL-AS1 Gene

Variants for SCEL-AS1 Gene

Sequence variations from dbSNP and Humsavar for SCEL-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000429972 -- 77,602,529(+) ATCAA(A/T)GCTCT intron-variant
rs1001031863 -- 77,603,950(+) TAAAA(A/C)AGAAT intron-variant
rs1001511306 -- 77,606,792(+) GGGGC(C/T)TTTGG intron-variant, upstream-variant-2KB
rs1001838239 -- 77,605,308(+) TCATG(C/G)CTGCC intron-variant
rs1001890649 -- 77,605,617(+) AAGAT(G/T)CAGGT intron-variant

Relevant External Links for SCEL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCEL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCEL-AS1 Gene

Disorders for SCEL-AS1 Gene

Relevant External Links for SCEL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCEL-AS1

No disorders were found for SCEL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCEL-AS1 Gene

Publications for SCEL-AS1 Gene

No publications were found for SCEL-AS1 Gene.

Products for SCEL-AS1 Gene

Sources for SCEL-AS1 Gene

Content
Loading form....