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Aliases for SCDP1 Gene

Aliases for SCDP1 Gene

  • Stearoyl-CoA Desaturase Pseudogene 1 2 3 5
  • Stearoyl-CoA Desaturase (Delta-9-Desaturase) Pseudogene 1 2 3
  • Stearoyl-CoA Desaturase (Delta-9-Desaturase) Pseudogene 2
  • SCDP 3

External Ids for SCDP1 Gene

Previous HGNC Symbols for SCDP1 Gene

  • SCDP

Previous GeneCards Identifiers for SCDP1 Gene

  • GC17P020688
  • GC17P019890
  • GC17P020696
  • GC17P020780
  • GC17P021264
  • GC17P021526
  • GC17P022216
  • GC17P021063
  • GC17P021833
  • GC17P022672
  • GC17P023002

Summaries for SCDP1 Gene

GeneCards Summary for SCDP1 Gene

SCDP1 (Stearoyl-CoA Desaturase Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCDP1 Gene

Genomics for SCDP1 Gene

Regulatory Elements for SCDP1 Gene

Enhancers for SCDP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F021322 0.9 Ensembl ENCODE 16.2 +539.0 538951 1.2 HDGF ATF1 CREB3L1 ARID4B SIN3A GLI4 DMAP1 ZNF2 ETS1 YY1 ENSG00000263729 ENSG00000244456 SCDP1 COTL1P2 TBC1D3P3 LOC729334 ENSG00000266925 ENSG00000227685 ENSG00000264981 ENSG00000267075
GH17F021419 1.1 Ensembl ENCODE 16.2 +635.5 635466 1.3 HDGF CREB3L1 ARID4B SIN3A GLI4 ZNF2 YY1 ZNF121 ZNF143 NFYC ENSG00000244456 ENSG00000263729 LOC729334 ENSG00000226096 ENSG00000267075 ENSG00000265567 LINC02002 SCDP1 LOC401875 COTL1P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCDP1 on UCSC Golden Path with GeneCards custom track

Promoters for SCDP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805866 350 800

Genomic Location for SCDP1 Gene

Chromosome:
17
Start:
20,784,250 bp from pter
End:
20,789,614 bp from pter
Size:
5,365 bases
Orientation:
Plus strand

Genomic View for SCDP1 Gene

Genes around SCDP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCDP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCDP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCDP1 Gene

Proteins for SCDP1 Gene

Post-translational modifications for SCDP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCDP1 Gene

Domains & Families for SCDP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCDP1 Gene

Function for SCDP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCDP1 Gene

Localization for SCDP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCDP1 Gene

Pathways & Interactions for SCDP1 Gene

SuperPathways for SCDP1 Gene

No Data Available

Interacting Proteins for SCDP1 Gene

Gene Ontology (GO) - Biological Process for SCDP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCDP1 Gene

Transcripts for SCDP1 Gene

mRNA/cDNA for SCDP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCDP1 Gene

No ASD Table

Relevant External Links for SCDP1 Gene

GeneLoc Exon Structure for
SCDP1
ECgene alternative splicing isoforms for
SCDP1

Expression for SCDP1 Gene

mRNA expression in normal human tissues for SCDP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCDP1 Gene:

SCDP1
genes like me logo Genes that share expression patterns with SCDP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCDP1 Gene

Orthologs for SCDP1 Gene

Evolution for SCDP1 Gene

ENSEMBL:
Gene Tree for SCDP1 (if available)
TreeFam:
Gene Tree for SCDP1 (if available)

No data available for Orthologs for SCDP1 Gene

Paralogs for SCDP1 Gene

No data available for Paralogs for SCDP1 Gene

Variants for SCDP1 Gene

Relevant External Links for SCDP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCDP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCDP1 Gene

Disorders for SCDP1 Gene

Relevant External Links for SCDP1

Genetic Association Database (GAD)
SCDP1

No disorders were found for SCDP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCDP1 Gene

Publications for SCDP1 Gene

  1. Human stearoyl-CoA desaturase: alternative transcripts generated from a single gene by usage of tandem polyadenylation sites. (PMID: 10229681) Zhang L. … Prouty S.M. (Biochem. J. 1999) 2 3 64

Products for SCDP1 Gene

Sources for SCDP1 Gene

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