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Aliases & Descriptions for SCD
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| Delta(9)-desaturase 3 | | EC 1.14.19.1 3 | | FADS5 1, 2 | | MSTP008 2 | | OTTHUMP00000020279 2 | | SCD1 2 | | SCDOS 2 | | delta-9-desaturase 2 |
| | | Descriptions |
|---|
| Fatty acid desaturase 2, 3 | | Stearoyl-CoA desaturase 3 | | acyl-CoA desaturase 2 | | predicted protein of HQ0998 2 | | stearoyl-CoA desaturase (delta-9-desaturase) 2 | | stearoyl-CoA desaturase 1 2 | | stearoyl-CoA desaturase opposite strand 1, 2 |
|
| | Search outside databases for aliases for SCD genePrevious GC identifers: GC10P101000 GC10P101340 GC10P102238 GC10P101771 |
Summaries for SCD(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SCD: Stearoyl-CoA desaturase (SCD; EC 1.14.99.5) is an iron-containing enzyme that catalyzes a rate-limiting step in the synthesis of unsaturated fatty acids. The principal product of SCD is oleic acid, which is formed by desaturation of stearic acid. The ratio of stearic acid to oleic acid has been implicated in the regulation of cell growth and differentiation through effects on cell membrane fluidity and signal transduction. Four SCD isoforms, Scd1 through Scd4, have been identified in mouse. In contrast, only 2 SCD isoforms, SCD1 and SCD5 (MIM 608370), have been identified in human. SCD1 shares about 85% amino acid identity with all 4 mouse SCD isoforms, as well as with rat Scd1 and Scd2. In contrast, SCD5 shares limited homology with the rodent SCDs and appears to be unique to primates (Zhang et al. (1999) [PubMed 10229681]; Wang et al., 2005 [PubMed 15907797]).[supplied by OMIM] UniProtKB/Swiss-Prot: ACOD_HUMAN, O00767Function: Terminal component of the liver microsomal stearyl-CoA desaturase system, that utilizes O(2) and electrons from reduced cytochrome b5 to catalyze the insertion of a double bond into a spectrum of fatty acyl-CoA substrates including palmitoyl-CoA and stearoyl-CoA |
Genomic Location for SCD
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SCD gene 
Entrez Gene cytogenetic band: 10q24.31 Ensembl cytogenetic band: 10q24.31 HGNC cytogenetic band: 10q23-q24SCD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P102096:
(about GC identifiers)
Start:
|
102,096,762 bp from pter |
End:
|
102,114,578 bp from pter |
Size:
|
17,817 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for SCD
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ACOD_HUMAN, O00767 (See
protein sequence)Recommended Name: Acyl-CoA desaturase Size: 359 amino acids; 41523 Da
Cofactor: Iron
Subcellular location: Endoplasmic reticulum membrane; Multi-pass membrane protein (Probable)
Secondary accessions: B2R5U0 Q16150 Q53GR9 Q5W037 Q5W038 Q6GSS4 Q96KF6 Q9BS07 Q9Y695Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005054.3
ENSEMBL proteins: ENSP00000359380
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SCD: Assays for SCD: | Protein
Domains/ Families for SCD(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O00767
ProtoNet protein and cluster: O00767 1 Blocks protein family: IPB001522 Fatty acid desaturase
UniProtKB/Swiss-Prot: ACOD_HUMAN, O00767Domain: The histidine box domains may contain the active site and/or be involved in metal ion bindingSimilarity: Belongs to the fatty acid desaturase family | Gene Function for SCD
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005063
Applied Biosystems Silencer® siRNAs for SCD
Sigma-Aldrich siRNA and siRNA Panels for SCD  Sigma-Aldrich shRNA for SCD  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005063                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005063                                  untagged cDNA clone in CMV expression vector: NM_005063 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005063
UniProtKB/Swiss-Prot: ACOD_HUMAN, O00767Function: Terminal component of the liver microsomal stearyl-CoA desaturase system, that utilizes O(2) and electrons from reduced cytochrome b5 to catalyze the insertion of a double bond into a spectrum of fatty acyl-CoA substrates including palmitoyl-CoA and stearoyl-CoACatalytic activity: Stearoyl-CoA + 2 ferrocytochrome b5 + O(2) + 2 H(+) = oleoyl-CoA + 2 ferricytochrome b5 + 2 H(2)OEnzyme Number (IUBMB): EC 1.14.19.1 Genatlas biochemistry entry for SCD:stearol-CoA-desaturase6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Scd2):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SCD
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for SCD (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for SCD 
5/28 Interacting proteins for SCD (ENSP000003593803) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006633 | fatty acid biosynthetic process |
IEA | -- | | GO:0055114 | oxidation reduction |
IEA | -- | About this table
|
Drugs & Compounds for SCD(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SCD 10/33 Novoseek chemical compound relationships for SCD gene (see all 33
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| stearoyl-coa |
93.75 |
26 |
11352637 (3), 8914942 (2), 17363919 (2), 18989145 (2) (see all 16) |
| sterculic acid |
86.25 |
9 |
12504086 (4), 15910739 (1), 1320912 (1) |
| palmitoleate |
86.04 |
12 |
14654089 (1), 18599738 (1), 11396956 (1), 11414710 (1) (see all 7) |
| fatty acid |
84.78 |
196 |
18599738 (4), 18982375 (4), 18687433 (3), 18062827 (3) (see all 99) |
| oleic acid |
78.10 |
29 |
2340302 (1), 14654089 (1), 18599738 (1), 19056549 (1) (see all 22) |
| linoleic acid |
75.89 |
32 |
11396956 (3), 17426927 (2), 16186393 (1), 16571147 (1) (see all 17) |
| palmitoleic acid |
73.74 |
9 |
18068341 (4), 18687433 (1), 18066610 (1) |
| sterol |
70.04 |
14 |
15460168 (1), 18982375 (1), 11414710 (1), 18181169 (1) (see all 12) |
| acetyl-coa |
64.55 |
10 |
11323427 (1), 17449569 (1), 12463690 (1), 18239551 (1) (see all 8) |
| lipid |
63.11 |
38 |
17485339 (4), 16213227 (2), 17391062 (2), 19119140 (2) (see all 24) |
About this table
|
Transcripts for SCD(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005063
Sigma-Aldrich siRNA and siRNA Panels for SCD  Sigma-Aldrich shRNA for SCD  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005063 REFSEQ mRNAs for SCD gene: NM_005063.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005063               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005063                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005063                                  untagged cDNA clone in CMV expression vector: NM_005063  Additional cDNA sequence: AB032261.1 AB208982.1 AF097514.1 AF109362.1 AF113690.1 AK222862.1 AK312312.1 BC005807.2 BC062303.1 S70284.1 Y13647.1 24/57 DOTS entries (see all 57
): DT.97863820 DT.91809273 DT.95377395 DT.95376842 DT.95377467 DT.91775766 DT.97804439 DT.95377727 DT.454377 DT.95377527 DT.95376748 DT.95134979 DT.121296789 DT.100746528 DT.100746510 DT.100746388 DT.100874096 DT.100746470 DT.121296820 DT.100746342 DT.121296835 DT.40124097 DT.91775761 DT.100746492 24/1725 AceView cDNA sequences (see all 1725
):BQ689271 BU686418 BM557930 BQ029193 AA857999 BU633457 BU622758 BQ919918 BQ899280 AI632229 AW630775 BU191505 BG028756 CD677252 T33743 BU844803 BQ879564 AI873858 CB529241 BQ923468 CD654151 AI096555 CB270038 AI554586
highest scoring ESTs for SCD:Y13647 AA148484 AA972173 AF097514 AI018246 AI065157 AI220058 AI635560 AL120451 AL562021 Unigene Cluster for SCD: Stearoyl-CoA desaturase (delta-9-desaturase) Hs.558396 [show with all ESTs]Unigene Representative Sequence: NM_005063
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for SCD
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | |
| SP1: | |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SCD
1 Ensembl transcript including schematic representation: ENST00000370355
|
Expression for SCD
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SCD expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SCD
1 / 2 / 3 10 probe-sets matching SCD gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATGACCTATT
SOURCE GeneReport for Unigene cluster: Hs.558396
Expression variation in blood from EXPOLDB for SCD |
Orthologs for SCD
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SCD gene from 5/11 species (see all 11
)
About this table Species with no ortholog for SCD
ENSEMBL Gene Tree for SCD | Paralogs for SCD(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SCD gene
- SCD52
|
SNPs/Variants for SCD(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SCD (up to first 250kb)
|
Disorders & Mutations for SCD
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604031
10/16 Novoseek disease relationships for SCD gene (see all 16
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| obesity |
48.68 |
25 |
18427563 (4), 17636091 (3), 17391062 (2), 16477801 (2) (see all 13) |
| fatty liver |
48.52 |
6 |
12538076 (1), 18952834 (1), 19258494 (1), 15333742 (1) (see all 5) |
| insulin resistance |
39.72 |
10 |
18030445 (2), 18427563 (2), 18062827 (2), 10521790 (1) (see all 7) |
| insulin sensitivity |
35.33 |
11 |
17636091 (4), 15855323 (2), 18286258 (1), 15662557 (1) |
| metabolic disorder |
32.48 |
1 |
18068341 (1) |
| prostatic adenocarcinoma |
12.66 |
1 |
15609334 (1) |
| neoplastic transformation |
10.27 |
2 |
15851470 (1), 15708362 (1) |
| hyperlipidemia |
5.60 |
2 |
12538076 (1), 12401889 (1) |
| tumors |
1.35 |
3 |
18813799 (1), 17483353 (1) |
| hypertriglyceridemia |
1.27 |
1 |
12401889 (1) |
About this table
Genetic Association Database: SCD Human Genome Epidemiology Navigator: SCD (139 documents)
|
Medical News for SCD(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for SCD (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/221 PubMed articles for SCD gene (see all 221
):- Human stearoyl-CoA desaturase: alternative transcripts generated from a single gene by usage of tandem polyadenylation sites. (PubMed id 10229681)1, 2, 3, 4 Zhang L....Prouty S.M. (1999)
- Partial characterization of a cDNA for human stearoyl-CoA desaturase and changes in its mRNA expression in some normal and malignant tissues. (PubMed id 7909540)2, 3, 4 Li J.... Gilmour R.S. (1994)
- Analysis of the contribution to type 2 diabetes susceptibility of sequence variation in the gene encoding stearoyl-CoA desaturase, a key regulator of lipid and carbohydrate metabolism. (PubMed id 15662557)1, 3, 6 Liew C.F....McCarthy M.I. (2004)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)3, 4 Deloukas P.... Rogers J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Isolation and characterization of the human stearoyl-CoA desaturase gene promoter: requirement of a conserved CCAAT cis-element. (PubMed id 11415448)3, 4 Zhang L.... Prouty S.M. (2001)
- Rosiglitazone increases indexes of stearoyl-CoA desaturase activity in humans: link to insulin sensitization and the role of dominant-negative mutation in peroxisome proliferator-activated receptor-gamma. (PubMed id 15855323)1, 3 Riserus U....Karpe F. (2005)
- Regulation of stearoyl coenzyme A desaturase expression in human retinal pigment epithelial cells by retinoic acid. (PubMed id 11397803)1, 3 Samuel W....Wiggert B. (2001)
- Ubiquitin-proteasome-dependent degradation of mammalian ER stearoyl-CoA desaturase. (PubMed id 16723740)1, 3 Kato H....Mihara K. (2006)
- Fatty acid desaturases in human adipose tissue: relationships between gene expression, desaturation indexes and insulin resistance. (PubMed id 18030445)1, 3 Sjogren P....Fisher R.M. (2008)
|
Search for SCD
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SCD
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SCD
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SCD(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SCD(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for SCD:

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