SERPINB3 Gene
protein-coding GIFtS : 56
GC18M059473
serpin peptidase inhibitor, clade B (ovalbumin), member 3 (Previous names: serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: SCC, SCCA1 )
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Aliases & Descriptions for SERPINB3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HsT1196 1 , 2 SCC 2 SCCA 3 SCCA-1 2 , 3 SCCA-PD 2 SCCA1 2 , 3 , 5 T4-A 1 , 2
Descriptions Protein T4-A 3 Squamous cell carcinoma antigen 1 2 , 3 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3 1 , 2 serpin peptidase inhibitor, clade B (ovalbumin), member 3 2
Search outside databases for aliases for SERPINB3 genePrevious GC identifers: GC18M061161 GC18M061295 GC18M059455 GC18M059457
Summaries for SERPINB3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 Function : May act as a protease inhibitor to modulate the host immune response against tumor cells
Gene Wiki entry for SERPINB3
Genomic Location for SERPINB3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SERPINB3 gene Entrez Gene cytogenetic band: 18q21.3 Ensembl cytogenetic band: 18q21.33 HGNC cytogenetic band: 18q21.3 SERPINB3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18M059473:
(about GC identifiers )
Start:
59,473,411 bp from pter
End:
59,480,170 bp from pter
Size:
6,760 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000018.8 NT_025028.13 Proteins for SERPINB3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 (See
protein sequence )Recommended Name: Serpin B3 Size : 390 amino acids; 44565 Da
Subcellular location : Cytoplasm. Note=Seems to also be secreted in plasma by cancerous cells but ata low level
Developmental stage : Its expression is closely related to cellular differentiation in both normaland malignant squamous cells
PDB structures from and Proteopedia : 2ZV6 (3D)
 
Secondary accessions : Q53H28 Q53YB5 Q86VF3 Q86W04 Q8IWL4 Q8IXI3 Q96J21 Q9BYF8Alternative splicing : 2 isoforms : P29508-1 P29508-2
REFSEQ proteins: NP_008850.1 ENSEMBL proteins: ENSP00000348795 ENSP00000343445 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA --
About this table Antibodies for SERPINB3: Assays for SERPINB3:
Protein
Domains/ Families for SERPINB3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P29508 ProtoNet protein and cluster: P29508
1 Blocks protein family : IPB000215 Serpin UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 Similarity : Belongs to the serpin family. Ov-serpin subfamily
Gene Function for SERPINB3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006919 Applied Biosystems Silencer ® siRNAs for SERPINB3 Sigma-Aldrich siRNA and siRNA Panels for SERPINB3 Sigma-Aldrich shRNA for SERPINB3 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006919                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006919                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_006919  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006919 UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 Function : May act as a protease inhibitor to modulate the host immune response against tumor cells
2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for SERPINB3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for SERPINB3 5/15 Interacting proteins for SERPINB3 (ENSP00000343445 3 P29508 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 15
)About this table
Drugs & Compounds for SERPINB3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SERPINB3 1 Novoseek chemical compound relationship for SERPINB3 gene
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Transcripts for SERPINB3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006919 Sigma-Aldrich siRNA and siRNA Panels for SERPINB3 Sigma-Aldrich shRNA for SERPINB3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_006919
REFSEQ mRNAs for SERPINB3 gene: NM_006919.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006919
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006919                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006919                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_006919  
Additional cDNA sequence: AB046399.1 AF428135.1 AF428136.1 AF428137.1 AF428138.1 AF428139.1 AF461146.1 AJ515706.1 AK222746.1 AK222753.1 AK307261.1 AK308383.1 AK310948.1 AK314805.1 AY190327.1 AY245778.1 AY245781.1 BC005224.1 BC008483.1 BT006748.1 EU852041.1 S66896.1 U19556.1
4 DOTS entries : DT.453388 DT.100788918 DT.92432754 DT.97774794
24/135 AceView cDNA sequences (see all 135
):AA861180 BM968440 BT006748 BC008483 BU686141 U19556 BC005224 BQ028405 BE156503 U19557 BU674965 BM975848 AB046399 X89015 CB129418 NM_006919 BX477537 BU687165 BE720615 S66896 BM968451 BU685771 AI081890 AB046400
highest scoring ESTs for SERPINB3 :AB046399 AW872674 DA590593 DB228764 DB233847 S66896 AK222746 AK222753 AW178758 AW381318
Unigene Cluster for SERPINB3: Serpin peptidase inhibitor, clade B (ovalbumin), member 3 Hs.227948 [show with all ESTs ] Unigene Representative Sequence: NM_006919 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000356424
ENST00000341074
Expression for SERPINB3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SERPINB3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SERPINB3 1 / 2 / 3
10 probe-sets matching SERPINB3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.227948 Expression variation in blood from EXPOLDB for SERPINB3
UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 Tissue specificity : Squamous cells. Expressed in some hepatocellular carcinoma (at protein level)
Orthologs for SERPINB3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SERPINB3 gene from 5/6 species (see all 6
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
chimpanzee (Pan troglodytes)
SERPINB31
--
serpin peptidase inhibitor, clade B (ovalbumin), member more
97.95(n) 96.67(a)
740098 XM_001141918.1 XP_001141918.1
mouse (Mus musculus)
Serpinb3d1
--
serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), more
71.5(n) 60.1(a)
394252 NM_201376.1 NP_958764.1
chicken (Gallus gallus)
SERPINB31
--
serpin peptidase inhibitor, clade B (ovalbumin), member more
55.9(n) 45.74(a)
420897 NM_001031001.1 NP_001026172.1
fruit fly (Drosophila melanogaster)
Spn13
42D4
serpin
36(a) (best of 15)
--
worm (Caenorhabditis elegans)
srp-73
V(8184025-8185481)
serine protease inhibitor
31(a) (best of 3)
--
About this table Species with no ortholog for SERPINB3 ENSEMBL Gene Tree for SERPINB3 Paralogs for SERPINB3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SERPINB3 gene SERPINB10 2 SERPINB12 2 SERPINB2 2 SERPINB4 2
SNPs/Variants for SERPINB3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SERPINB3 (up to first 250kb)
Disorders & Mutations for SERPINB3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600517 10/25 Novoseek disease relationships for SERPINB3 gene (see all 25
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
carcinoma squamous cell
83.71
109
11182054 (5), 7687515 (2), 10653592 (2), 12743426 (2) (see all 68 )
cervical squamous cell carcinoma
66.44
4
18097581 (2), 9817979 (1), 10873412 (1)
hepatocellular carcinoma
50.99
6
16550605 (1), 18638391 (1), 14993646 (1), 17893121 (1) (see all 5 )
squamous cell cancer
48.27
1
11241309 (1)
cervical cancer
35.52
4
16641548 (3), 17291250 (1)
tumors
35.46
29
2020345 (2), 1725572 (2), 12437110 (2), 17238969 (2) (see all 23 )
chronic liver disease
33.43
2
18638391 (1), 18657489 (1)
cancer
33.35
29
11369142 (3), 11241309 (2), 15286970 (2), 17364691 (1) (see all 16 )
cirrhosis
30.85
6
18657489 (1), 15887222 (1)
laryngeal cancer
29.76
1
10845558 (1)
About this table Human Genome Epidemiology Navigator: SERPINB3 (1 document)
Medical News for SERPINB3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SERPINB3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/111 PubMed articles for SERPINB3 gene (see all 111
): A serine proteinase inhibitor locus at 18q21.3 contains a tandem duplication of the human squamous cell carcinoma antigen gene. (PubMed id 7724531) 1, 2, 3, 4 Schneider S.S....Silverman G.A. (1995) Overexpression of squamous cell carcinoma antigen variants in hepatocellular carcinoma. (PubMed id 14970861) 1, 3, 4 Pontisso P....Fassina G. (2004) Circulating serpin tumor markers SCCA1 and SCCA2 are not actively secreted but reside in the cytosol of squamous carcinoma cells. (PubMed id 10956412) 1, 3, 4 Uemura Y.... Silverman G.A. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Binding of HBV to cells is mediated by SCCA1 but does not require the reactive site loop. (PubMed id 12975381) 3, 4 Moore P.L.... Harrison T.J. (2003) Squamous cell carcinoma antigen is a new member of the serine protease inhibitors. (PubMed id 1958219) 3, 4 Suminami Y.... Kato H. (1991) Surface expression of squamous cell carcinoma antigen (SCCA) can be increased by the preS1(21-47) sequence of hepatitis B virus. (PubMed id 14993646) 1, 3 Ruvoletto M.G....Pontisso P. (2004) Co-expression of the squamous cell carcinoma antigens 1 and 2 in normal adult human tissues and squamous cell carcinomas. (PubMed id 10653592) 1, 3 Cataltepe S....Upton M.P. (2000) Expression pattern of squamous cell carcinoma antigen in oesophageal dysplasia and squamous cell carcinoma. (PubMed id 17523076) 1, 3 Parenti A....De Caro R. (2007) Inhibitory mechanism of a cross-class serpin, the squamous cell carcinoma antigen 1. (PubMed id 12949073) 1, 3 Masumoto K....Izuhara K. (2003)
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Genome Databases showing SERPINB3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SERPINB3
(According to HUGE )
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--
Specialized Databases showing SERPINB3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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