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SERPINB3 Gene

protein-coding   GIFtS: 56

GC18M059473
serpin peptidase inhibitor, clade B (ovalbumin), member 3
(Previous names: serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: SCC, SCCA1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
HsT1196 1, 2
SCC 2
SCCA 3
SCCA-1 2, 3
SCCA-PD 2
SCCA1 2, 3, 5
T4-A 1, 2
Descriptions
Protein T4-A 3
Squamous cell carcinoma antigen 1 2, 3
serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 3 1, 2
serpin peptidase inhibitor, clade B (ovalbumin), member 3 2
External Ids
HGNC: 105691
Entrez Gene: 63172
UniProtKB: P295083
Ensembl: ENSG000002060737
Search outside databases for aliases for SERPINB3 gene

Previous GC identifers: GC18M061161 GC18M061295 GC18M059455 GC18M059457

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508
Function: May act as a protease inhibitor to modulate the host immune response against tumor cells

Gene Wiki entry for SERPINB3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the SERPINB3 gene  

Entrez Gene cytogenetic band: 18q21.3   Ensembl cytogenetic band:  18q21.33   HGNC cytogenetic band: 18q21.3

SERPINB3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 18         GeneLoc Exon Structure

GeneLoc location for GC18M059473:     (about GC identifiers)

Start:
59,473,411 bp from pter
End:
59,480,170 bp from pter
Size:
6,760 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000018.8  NT_025028.13  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508 (See protein sequence)
Recommended Name: Serpin B3  
Size: 390 amino acids; 44565 Da
Subcellular location: Cytoplasm. Note=Seems to also be secreted in plasma by cancerous cells but at
a low level
Developmental stage: Its expression is closely related to cellular differentiation in both normal
and malignant squamous cells
PDB structures from and Proteopedia :
2ZV6 (3D)    
Secondary accessions: Q53H28 Q53YB5 Q86VF3 Q86W04 Q8IWL4 Q8IXI3 Q96J21 Q9BYF8
Alternative splicing: 2 isoforms:  P29508-1   P29508-2   

REFSEQ proteins: NP_008850.1  

ENSEMBL proteins: 
ENSP00000348795 ENSP00000343445 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (SerpinB3)
Human Recombinant Proteins from Abnova (SERPINB3)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005737 cytoplasm IEA--
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Antibodies for SERPINB3: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for SERPINB3
Browse R&D Systems for Antibodies
Antibodies from Abcam (SerpinB3), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (SERPINB3)
Novus Biologicals Antibodies for SERPINB3

Assays for SERPINB3: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro domain/family:
 IPR000215 Protease_inhib_I4_serpin


   GeneDecks  SERPINB3 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry P29508

ProtoNet protein and cluster: P29508

1 Blocks protein family: IPB000215 Serpin

UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508
Similarity: Belongs to the serpin family. Ov-serpin subfamily

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SERPINB3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (SERPINB3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006919

              Applied Biosystems Silencer® siRNAs for SERPINB3

              Sigma-Aldrich siRNA and siRNA Panels for SERPINB3  
                     Sigma-Aldrich shRNA for SERPINB3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for SERPINB3
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006919
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006919
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_006919 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_006919

UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508
Function: May act as a protease inhibitor to modulate the host immune response against tumor cells

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0004867 serine-type endopeptidase inhibitor activity TAS7724531
GO:0005515 protein binding IPI17353931
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


 Gene Network CentralTM Interacting Genes and Proteins Network for  SERPINB3 


5/15 Interacting proteins for SERPINB3 (ENSP000003434453 P295081, 2) via UniProtKB, MINT, and/or STRING (see all 15 )
InteractantInteraction Details
GeneCardExternal ID(s)
USF2Q158531EBI-359110, EBI-1055994
TNFRSF1BP203332MINT-49424
CTSGENSP000002163363STRING (score=.964)
CTSL1ENSP000003650733STRING (score=.871)
MAPK8ENSP000003632913STRING (score=.844)
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for SERPINB3
1 Novoseek chemical compound relationship for SERPINB3 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
scca1 99.29 223 12949073 (8), 10653592 (7), 14630915 (7), 10852705 (7) (see all 46)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (SERPINB3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (SERPINB3)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006919

              Sigma-Aldrich siRNA and siRNA Panels for SERPINB3  
                     Sigma-Aldrich shRNA for SERPINB3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_006919  

REFSEQ mRNAs for SERPINB3 gene: 

NM_006919.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_006919  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006919
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006919
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_006919 

Additional cDNA sequence: 

AB046399.1 AF428135.1 AF428136.1 AF428137.1 AF428138.1 AF428139.1 AF461146.1 AJ515706.1 
AK222746.1 AK222753.1 AK307261.1 AK308383.1 AK310948.1 AK314805.1 AY190327.1 AY245778.1 
AY245781.1 BC005224.1 BC008483.1 BT006748.1 EU852041.1 S66896.1 U19556.1 

4 DOTS entries:

DT.453388  DT.100788918  DT.92432754  DT.97774794 

24/135 AceView cDNA sequences (see all 135 ):

AA861180 BM968440 BT006748 BC008483 BU686141 U19556 BC005224 BQ028405 
BE156503 U19557 BU674965 BM975848 AB046399 X89015 CB129418 NM_006919 
BX477537 BU687165 BE720615 S66896 BM968451 BU685771 AI081890 AB046400 

highest scoring ESTs for SERPINB3:

AB046399 AW872674 DA590593 DB228764 DB233847 S66896 AK222746 AK222753 AW178758 AW381318 

Unigene Cluster for SERPINB3:

Serpin peptidase inhibitor, clade B (ovalbumin), member 3
Hs.227948  [show with all ESTs]
Unigene Representative Sequence: NM_006919


GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:
ENST00000356424  ENST00000341074  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

SERPINB3 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for SERPINB3

1 / 2 / 3

10 probe-sets matching SERPINB3 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

1343_s_at2, 3 U95-A 2 1.00 0.62 0.74 0.94 S66896 0.80 0.70 0.75 1

1549_s_at2, 3 U95-A 2 1.00 0.50 0.66 1.24 U19557 0.60 0.30 0.47 2

209720_s_at2, 3 U133-A 2 1.00 0.64 -- -- BC005224 0.60 0.62 0.61 1

209719_x_at2, 3 U133-A 2 1.00 0.55 -- -- U19556 0.40 0.50 0.45 1

211906_s_at2, 3 U133-A 2 1.00 0.50 -- -- AB046400 0.20 0.17 0.18 2

210413_x_at2, 3 U133-A 2 1.00 0.50 -- -- U19557 0.60 0.30 0.47 2

209720_s_at2 U133Plus2 2 1.00 0.64 -- -- -- -- -- -- --

209719_x_at2 U133Plus2 2 1.00 0.55 -- -- -- -- -- -- --

211906_s_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --

210413_x_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.227948

Expression variation in blood from EXPOLDB for SERPINB3

UniProtKB/Swiss-Prot: SPB3_HUMAN, P29508
Tissue specificity: Squamous cells. Expressed in some hepatocellular carcinoma (at protein level)

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for SERPINB3 gene from 5/6 species (see all 6 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
SERPINB31   -- serpin peptidase inhibitor, clade B (ovalbumin), member more 97.95(n)
96.67(a)
740098  XM_001141918.1  XP_001141918.1 
mouse
(Mus musculus)
Serpinb3d1   -- serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), more 71.5(n)
60.1(a)
394252  NM_201376.1  NP_958764.1 
chicken
(Gallus gallus)
SERPINB31   -- serpin peptidase inhibitor, clade B (ovalbumin), member more 55.9(n)
45.74(a)
420897  NM_001031001.1  NP_001026172.1 
fruit fly
(Drosophila melanogaster)
Spn13 42D4 serpin 36(a)
(best of 15)
  --
worm
(Caenorhabditis elegans)
srp-73 V(8184025-8185481) serine protease inhibitor 31(a)
(best of 3)
  --
About this table        Species with no ortholog for SERPINB3

ENSEMBL Gene Tree for SERPINB3
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for SERPINB3 gene
SERPINB102  SERPINB122  SERPINB22  SERPINB42  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/79 NCBI SNPs in SERPINB3 are shown (see all 79 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 13)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 18 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs31802271,2
A,C,F,H59473992(-) AGTAGG/CATTCG 1 A/G mis113Minor allele frequency- C:0.12MN EU EA WA 1428
--
rs10652051,2
C,F,H,O59473975(-) CACCTA/GCTTCA 1 T/A mis1 ese39Minor allele frequency- G:0.20MN EU EA WA 1014
rs49412101,2
A,C,F,H59473023(+) CCAGGC/TTGTTT 1 -- ng514Minor allele frequency- T:0.49EU EA WA 418
--
rs116646931,2
C,F,H59481552(+) acaaaG/Cttgtg 1 -- ng314Minor allele frequency- C:0.45EU EA WA 418
--
rs72411521,2
C,F,H59481353(+) ATTCCA/TGTGTT 1 -- ng314Minor allele frequency- T:0.05EU EA WA 416
--
rs10472571,2
F59473845(-) CATTTG/AGAAAA 1 -- ut311Minor allele frequency- A:0.04MN 184
--
rs93200251,2
C59481853(+) ctttaA/Ttcata 1 -- ng310--------
--
rs4707501,2
F59480157(-) AGGGAA/GAGGCA 1 -- ut51 tfbs3 trp31Minor allele frequency- G:0.04MN 184
--
rs10472641,2
F59473575(-) TGTTTG/CTGACC 1 -- ut311Minor allele frequency- C:0.22MN 184
--
rs72408521,2
A59480996(+) tttatC/Tagggg 1 -- ng310--------
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HapMap Linkage Disequilibrium images for SERPINB3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 600517

10/25 Novoseek disease relationships for SERPINB3 gene (see all 25 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
carcinoma squamous cell 83.71 109 11182054 (5), 7687515 (2), 10653592 (2), 12743426 (2) (see all 68)
cervical squamous cell carcinoma 66.44 4 18097581 (2), 9817979 (1), 10873412 (1)
hepatocellular carcinoma 50.99 6 16550605 (1), 18638391 (1), 14993646 (1), 17893121 (1) (see all 5)
squamous cell cancer 48.27 1 11241309 (1)
cervical cancer 35.52 4 16641548 (3), 17291250 (1)
tumors 35.46 29 2020345 (2), 1725572 (2), 12437110 (2), 17238969 (2) (see all 23)
chronic liver disease 33.43 2 18638391 (1), 18657489 (1)
cancer 33.35 29 11369142 (3), 11241309 (2), 15286970 (2), 17364691 (1) (see all 16)
cirrhosis 30.85 6 18657489 (1), 15887222 (1)
laryngeal cancer 29.76 1 10845558 (1)
About this table

Human Genome Epidemiology Navigator: SERPINB3 (1 document)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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10/111 PubMed articles for SERPINB3 gene (see all 111 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 6317 HGNC: 10569 AceView: SERPINB4andSERPINB3 Ensembl:ENSG00000206073 euGenes: HUgn6317
ECgene: SERPINB3 H-InvDB: SERPINB3
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
ATLAS Chromosomes in Cancer entry for SERPINB3 Genetics and Cytogenetics in Oncology and Haematology
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for SERPINB3:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



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 Predesigned and custom siRNAs for SERPINB3 Antibodies for SERPINB3
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for SERPINB3 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant & Natural Proteins  

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 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for SERPINB3

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