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Aliases for SCART1 Gene

Aliases for SCART1 Gene

  • Scavenger Receptor Protein Family Member 3

External Ids for SCART1 Gene

Summaries for SCART1 Gene

GeneCards Summary for SCART1 Gene

SCART1 (Scavenger Receptor Protein Family Member) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCART1 Gene

Genomics for SCART1 Gene

Genomic Location for SCART1 Gene

Start:
133,453,928 bp from pter
End:
133,523,558 bp from pter
Size:
69,631 bases
Orientation:
Plus strand

Genomic View for SCART1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCART1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCART1 Gene

No data available for Regulatory Elements for SCART1 Gene

Proteins for SCART1 Gene

Post-translational modifications for SCART1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCART1 Gene

Domains for SCART1 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SCART1 Gene

Function for SCART1 Gene

Gene Ontology (GO) - Molecular Function for SCART1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005044 scavenger receptor activity IEA --
genes like me logo Genes that share ontologies with SCART1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCART1 Gene

Localization for SCART1 Gene

Gene Ontology (GO) - Cellular Components for SCART1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SCART1: view

Pathways for SCART1 Gene

SuperPathways for SCART1 Gene

No Data Available

Interacting Proteins for SCART1 Gene

Gene Ontology (GO) - Biological Process for SCART1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002376 immune system process IEA --
GO:0006898 receptor-mediated endocytosis IEA --
genes like me logo Genes that share ontologies with SCART1: view

No data available for Pathways by source for SCART1 Gene

Transcripts for SCART1 Gene

mRNA/cDNA for SCART1 Gene

(1) REFSEQ mRNAs :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCART1 Gene

No ASD Table

Relevant External Links for SCART1 Gene

GeneLoc Exon Structure for
SCART1

Expression for SCART1 Gene

mRNA expression in normal human tissues for SCART1 Gene

genes like me logo Genes that share expressions with SCART1: view

Orthologs for SCART1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SCART1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Cd163l1 16
Species with no ortholog for SCART1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCART1 Gene

ENSEMBL:
Gene Tree for SCART1 (if available)
TreeFam:
Gene Tree for SCART1 (if available)

Paralogs for SCART1 Gene

No data available for Paralogs for SCART1 Gene

Variants for SCART1 Gene

Sequence variations from dbSNP and Humsavar for SCART1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs730400 -- 133,459,398(+) GGACA(A/G)AGGGG intron-variant
rs730568 -- 133,458,253(+) GCCTA(A/G)ATGCA nc-transcript-variant
rs730569 -- 133,458,321(+) CCTGA(A/G)AACAC nc-transcript-variant
rs731946 -- 133,459,805(-) CCTCA(C/G)CGGAG splice-donor-variant
rs880282 -- 133,463,133(+) TTACA(C/T)TGCTC intron-variant

Relevant External Links for SCART1 Gene

HapMap Linkage Disequilibrium report
SCART1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SCART1 Gene

Disorders for SCART1 Gene

No disorders were found for SCART1 Gene.

No data available for UniProtKB/Swiss-Prot for SCART1 Gene

Publications for SCART1 Gene

  1. Cell density can affect cholesteryl ester accumulation in the human THP-1 macrophage. (PMID: 7868969) Rodriguez A. … Bachorik P.S. (J. Lipid Res. 1994) 23
  2. [Structure and function of the scavenger receptor]. (PMID: 8483260) Itakura H. … Kodama T. (Nippon Rinsho 1993) 23
  3. Scavenger receptor family proteins: roles for atherosclerosis, host defence and disorders of the central nervous system. (PMID: 9711230) Yamada Y. … Kodama T. (Cell. Mol. Life Sci. 1998) 23
  4. Evidence of macrophage foam cell formation by very low-density lipoprotein receptor: interferon-gamma inhibition of very low-density lipoprotein receptor expression and foam cell formation in macrophages. (PMID: 11222479) Kosaka S. … Miyamori I. (Circulation 2001) 23
  5. A novel lipid-based drug carrier targeted to the non-parenchymal cells, including hepatic stellate cells, in the fibrotic livers of bile duct ligated rats. (PMID: 17493581) Adrian J.E. … Poelstra K. (Biochim. Biophys. Acta 2007) 23

Products for SCART1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCART1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCART1
    • Block miRNA regulation of SCART1 using miScript Target Protectors

    Sources for SCART1 Gene

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