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Aliases for SCARNA9L Gene

Subcategory (RNA class) for SCARNA9L Gene


Aliases for SCARNA9L Gene

  • Small Cajal Body-Specific RNA 9-Like 2 3
  • Small Cajal Body-Specific RNA 9-Like (Retrotransposed) 2

External Ids for SCARNA9L Gene

ORGUL Members for SCARNA9L Gene

Previous GeneCards Identifiers for SCARNA9L Gene

  • GC0XU900980
  • GC0XM020066
  • GC0XM020155
  • GC0XM020157
  • GC0XM020161
  • GC0XM020166

Summaries for SCARNA9L Gene

GeneCards Summary for SCARNA9L Gene

SCARNA9L (Small Cajal Body-Specific RNA 9-Like) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA9L Gene

Genomics for SCARNA9L Gene

Regulatory Elements for SCARNA9L Gene

Genomic Location for SCARNA9L Gene

20,136,066 bp from pter
20,136,413 bp from pter
348 bases
Minus strand

Genomic View for SCARNA9L Gene

Genes around SCARNA9L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA9L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA9L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA9L Gene

Proteins for SCARNA9L Gene

Post-translational modifications for SCARNA9L Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA9L Gene

Domains & Families for SCARNA9L Gene

Gene Families for SCARNA9L Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA9L: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA9L Gene

Function for SCARNA9L Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA9L Gene

Localization for SCARNA9L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA9L Gene

Pathways & Interactions for SCARNA9L Gene

SuperPathways for SCARNA9L Gene

No Data Available

Interacting Proteins for SCARNA9L Gene

Gene Ontology (GO) - Biological Process for SCARNA9L Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA9L Gene

Transcripts for SCARNA9L Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA9L Gene

No ASD Table

Relevant External Links for SCARNA9L Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for SCARNA9L Gene

Expression for SCARNA9L Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA9L Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA9L Gene

Orthologs for SCARNA9L Gene

No data available for Orthologs and Evolution for SCARNA9L Gene

Paralogs for SCARNA9L Gene

No data available for Paralogs for SCARNA9L Gene

Variants for SCARNA9L Gene

Sequence variations from dbSNP and Humsavar for SCARNA9L Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs113549255 -- 20,138,158(+) TGCCA(A/C)CACAC intron-variant, upstream-variant-2KB
rs12560085 -- 20,136,520(+) TTTAC(C/T)TCAGT intron-variant, upstream-variant-2KB
rs140419474 -- 20,138,139(+) AGCTG(A/G)GATTA intron-variant, upstream-variant-2KB
rs141026404 -- 20,135,795(+) CACAT(G/T)GCTTC downstream-variant-500B, reference, synonymous-codon
rs144941267 -- 20,136,341(+) AGACC(A/G)GAAAG intron-variant, nc-transcript-variant

Relevant External Links for SCARNA9L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA9L Gene

Disorders for SCARNA9L Gene

Relevant External Links for SCARNA9L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SCARNA9L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA9L Gene

Publications for SCARNA9L Gene

  1. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SCARNA9L Gene

Sources for SCARNA9L Gene

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