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Aliases for SCARNA9 Gene

Subcategory (RNA class) for SCARNA9 Gene

scaRNA

Quality Score for this RNA gene is

8

Aliases for SCARNA9 Gene

  • Small Cajal Body-Specific RNA 9 2 3 5
  • MgU2-19/30 ScaRNA 3
  • MgU2-19/30 3
  • Z32 3

External Ids for SCARNA9 Gene

ORGUL Members for SCARNA9 Gene

Previous GeneCards Identifiers for SCARNA9 Gene

  • GC11P093098
  • GC11P093456
  • GC11P089531
  • GC11P093457
  • GC11P093458
  • GC11P093459
  • GC11P093460
  • GC11P093462
  • GC11P093466
  • GC11P093479
  • GC11P093723
  • GC11P093725

Summaries for SCARNA9 Gene

GeneCards Summary for SCARNA9 Gene

SCARNA9 (Small Cajal Body-Specific RNA 9) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA9 Gene

Genomics for SCARNA9 Gene

Regulatory Elements for SCARNA9 Gene

Promoters for SCARNA9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SCARNA9 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA9 Gene

Chromosome:
11
Start:
93,721,513 bp from pter
End:
93,721,866 bp from pter
Size:
354 bases
Orientation:
Plus strand

Genomic View for SCARNA9 Gene

Genes around SCARNA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA9 Gene

ORGUL Member Location for SCARNA9 Gene

ORGUL Member Location for SCARNA9 gene

Proteins for SCARNA9 Gene

Post-translational modifications for SCARNA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA9 Gene

Domains & Families for SCARNA9 Gene

Gene Families for SCARNA9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA9 Gene

Function for SCARNA9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA9 Gene

Localization for SCARNA9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA9 Gene

Pathways & Interactions for SCARNA9 Gene

SuperPathways for SCARNA9 Gene

No Data Available

Interacting Proteins for SCARNA9 Gene

Gene Ontology (GO) - Biological Process for SCARNA9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA9 Gene

Drugs & Compounds for SCARNA9 Gene

No Compound Related Data Available

Transcripts for SCARNA9 Gene

mRNA/cDNA for SCARNA9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA9 Gene

No ASD Table

Relevant External Links for SCARNA9 Gene

GeneLoc Exon Structure for
SCARNA9
ECgene alternative splicing isoforms for
SCARNA9

Expression for SCARNA9 Gene

mRNA expression in normal human tissues for SCARNA9 Gene

genes like me logo Genes that share expression patterns with SCARNA9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA9 Gene

Orthologs for SCARNA9 Gene

Evolution for SCARNA9 Gene

ENSEMBL:
Gene Tree for SCARNA9 (if available)
TreeFam:
Gene Tree for SCARNA9 (if available)

No data available for Orthologs for SCARNA9 Gene

Paralogs for SCARNA9 Gene

No data available for Paralogs for SCARNA9 Gene

Variants for SCARNA9 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA9 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SCARNA9 Gene

HapMap Linkage Disequilibrium report
SCARNA9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SCARNA9 Gene

Disorders for SCARNA9 Gene

Relevant External Links for SCARNA9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA9

No disorders were found for SCARNA9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA9 Gene

Publications for SCARNA9 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 3 67
  2. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3

Products for SCARNA9 Gene

Sources for SCARNA9 Gene

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