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Aliases for SCARNA9 Gene

Subcategory (RNA class) for SCARNA9 Gene

scaRNA

Quality Score for this RNA gene is

8

Aliases for SCARNA9 Gene

  • Small Cajal Body-Specific RNA 9 2 3
  • MgU2-19/30 ScaRNA 3
  • MgU2-19/30 3
  • Z32 3

External Ids for SCARNA9 Gene

ORGUL Members for SCARNA9 Gene

Previous GeneCards Identifiers for SCARNA9 Gene

  • GC11P093098
  • GC11P093456
  • GC11P089531
  • GC11P093457
  • GC11P093458
  • GC11P093459
  • GC11P093460
  • GC11P093462
  • GC11P093466
  • GC11P093479

Summaries for SCARNA9 Gene

GeneCards Summary for SCARNA9 Gene

SCARNA9 (Small Cajal Body-Specific RNA 9) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA9 Gene

Genomics for SCARNA9 Gene

Regulatory Elements for SCARNA9 Gene

Genomic Location for SCARNA9 Gene

Start:
93,721,513 bp from pter
End:
93,721,866 bp from pter
Size:
354 bases
Orientation:
Plus strand

Genomic View for SCARNA9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA9 Gene

ORGUL Member Location for SCARNA9 Gene

ORGUL Member Location for SCARNA9 gene

Proteins for SCARNA9 Gene

Post-translational modifications for SCARNA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA9 Gene

Domains for SCARNA9 Gene

Gene Families for SCARNA9 Gene

HGNC:
  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA9 Gene

Function for SCARNA9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA9 Gene

Localization for SCARNA9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA9 Gene

Pathways for SCARNA9 Gene

SuperPathways for SCARNA9 Gene

No Data Available

Interacting Proteins for SCARNA9 Gene

Gene Ontology (GO) - Biological Process for SCARNA9 Gene

None

No data available for Pathways by source for SCARNA9 Gene

Transcripts for SCARNA9 Gene

mRNA/cDNA for SCARNA9 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA9 Gene

No ASD Table

Relevant External Links for SCARNA9 Gene

GeneLoc Exon Structure for
SCARNA9
ECgene alternative splicing isoforms for
SCARNA9

Expression for SCARNA9 Gene

mRNA expression in normal human tissues for SCARNA9 Gene

genes like me logo Genes that share expressions with SCARNA9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA9 Gene

Orthologs for SCARNA9 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SCARNA9 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Scarna9 16
Species with no ortholog for SCARNA9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA9 Gene

ENSEMBL:
Gene Tree for SCARNA9 (if available)
TreeFam:
Gene Tree for SCARNA9 (if available)

Paralogs for SCARNA9 Gene

No data available for Paralogs for SCARNA9 Gene

Variants for SCARNA9 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA9 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SCARNA9 Gene

HapMap Linkage Disequilibrium report
SCARNA9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA9 Gene

Disorders for SCARNA9 Gene

No disorders were found for SCARNA9 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA9 Gene

Publications for SCARNA9 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 3
  2. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3

Products for SCARNA9 Gene

Sources for SCARNA9 Gene

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