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Aliases for SCARNA8 Gene

Subcategory (RNA class) for SCARNA8 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA8 Gene

  • Small Cajal Body-Specific RNA 8 2 3 5
  • U92 3

External Ids for SCARNA8 Gene

Previous GeneCards Identifiers for SCARNA8 Gene

  • GC09M019055
  • GC09M019065

Summaries for SCARNA8 Gene

GeneCards Summary for SCARNA8 Gene

SCARNA8 (Small Cajal Body-Specific RNA 8) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA8 Gene

Genomics for SCARNA8 Gene

Regulatory Elements for SCARNA8 Gene

Enhancers for SCARNA8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F018975 0.7 Ensembl ENCODE 14.5 +87.1 87135 1.7 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF302 KLF7 ZNF263 ENSG00000273226 ENSG00000227167 ENSG00000270712 SCARNA8 SAXO1 RPS6 RPS6P10 HAUS6 PIR34932 LOC105375985
GH09F019118 1.1 Ensembl ENCODE 13.8 -55.7 -55722 1.8 GTF3C2 SSRP1 POLR3A JUN CEBPB PLIN2 SCARNA8 SAXO1 PSMC3P1 HAUS6 GC09M019109
GH09F019114 0.7 ENCODE 13.8 -50.4 -50412 0.2 LEF1 ATF1 ZNF792 MLX CEBPG THRB ZBTB40 ZNF48 RARA GTF3C2 PLIN2 SCARNA8 GC09M019109
GH09F019158 1.2 FANTOM5 Ensembl ENCODE 13.7 -97.8 -97847 5.6 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 SCARNA8 PLIN2 ACER2 RPS6P10
GH09F019377 0.2 ENCODE 13.7 -315.7 -315737 4.2 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 RPS6 ENSG00000273226 SCARNA8 ENSG00000272842 GC09M019380 GC09M019381
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCARNA8 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA8 Gene

Chromosome:
9
Start:
19,063,656 bp from pter
End:
19,063,786 bp from pter
Size:
131 bases
Orientation:
Minus strand

Genomic View for SCARNA8 Gene

Genes around SCARNA8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA8 Gene

Proteins for SCARNA8 Gene

Post-translational modifications for SCARNA8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA8 Gene

Domains & Families for SCARNA8 Gene

Gene Families for SCARNA8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA8 Gene

Function for SCARNA8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA8 Gene

Localization for SCARNA8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA8 Gene

Pathways & Interactions for SCARNA8 Gene

SuperPathways for SCARNA8 Gene

No Data Available

Interacting Proteins for SCARNA8 Gene

Gene Ontology (GO) - Biological Process for SCARNA8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA8 Gene

Transcripts for SCARNA8 Gene

mRNA/cDNA for SCARNA8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA8 Gene

No ASD Table

Relevant External Links for SCARNA8 Gene

GeneLoc Exon Structure for
SCARNA8
ECgene alternative splicing isoforms for
SCARNA8

Expression for SCARNA8 Gene

mRNA expression in normal human tissues for SCARNA8 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA8 Gene:

SCARNA8

SOURCE GeneReport for Unigene cluster for SCARNA8 Gene:

Hs.689635
genes like me logo Genes that share expression patterns with SCARNA8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA8 Gene

Orthologs for SCARNA8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA8 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA8 35
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA8 35
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA8 35
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scarna8 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA8 35
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCARNA8 35
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA8 35
  • 79 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SCARNA8 35
  • 72 (a)
OneToOne
Species where no ortholog for SCARNA8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA8 Gene

ENSEMBL:
Gene Tree for SCARNA8 (if available)
TreeFam:
Gene Tree for SCARNA8 (if available)

Paralogs for SCARNA8 Gene

No data available for Paralogs for SCARNA8 Gene

Variants for SCARNA8 Gene

Sequence variations from dbSNP and Humsavar for SCARNA8 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10757026 -- 19,063,931(+) ACAGG(G/T)TCCAA intron-variant, upstream-variant-2KB
rs10811107 -- 19,064,699(+) TATCA(G/T)AGTAA intron-variant, upstream-variant-2KB
rs111665062 -- 19,064,332(+) CTAAA(C/T)TTTAC intron-variant, upstream-variant-2KB
rs112185018 -- 19,065,714(+) TGGGC(A/G)CCTGT intron-variant, upstream-variant-2KB
rs112839408 -- 19,063,515(+) ATACC(C/T)TTTCA downstream-variant-500B, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SCARNA8 Gene

Variant ID Type Subtype PubMed ID
nsv1161845 CNV duplication 26073780

Relevant External Links for SCARNA8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA8 Gene

Disorders for SCARNA8 Gene

Relevant External Links for SCARNA8

Genetic Association Database (GAD)
SCARNA8
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA8

No disorders were found for SCARNA8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA8 Gene

Publications for SCARNA8 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 2 3 64
  2. hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase. (PMID: 16601202) Hoareau-Aveilla C. … Henry Y. (RNA 2006) 3 64

Products for SCARNA8 Gene

Sources for SCARNA8 Gene

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