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Aliases for SCARNA8 Gene

Subcategory (RNA class) for SCARNA8 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA8 Gene

  • Small Cajal Body-Specific RNA 8 2 3 5
  • U92 3

External Ids for SCARNA8 Gene

Previous GeneCards Identifiers for SCARNA8 Gene

  • GC09M019055
  • GC09M019065

Summaries for SCARNA8 Gene

GeneCards Summary for SCARNA8 Gene

SCARNA8 (Small Cajal Body-Specific RNA 8) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA8 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA8 Gene

Genomics for SCARNA8 Gene

GeneHancer (GH) Regulatory Elements for SCARNA8 Gene

Promoters and enhancers for SCARNA8 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I019173 Enhancer 1.4 Ensembl ENCODE dbSUPER 31.5 -110.5 -110481 1.3 HDGF FOXA2 SMAD1 ARNT ARID4B YBX1 ZNF2 ZBTB7B IRF4 E2F8 DENND4C SCARNA8 HAUS6 ENSG00000273226 ENSG00000272842 PLIN2 RPS6 SAXO1 PSMC3P1 RPS6P10
GH09I019377 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.5 -315.7 -315737 4.2 HDGF PKNOX1 CLOCK SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 RPS6 GC09M019380 GC09M019381 ENSG00000273226 DENND4C SCARNA8
GH09I018975 Enhancer 1.2 Ensembl ENCODE 13.4 +87.1 87135 1.7 PKNOX1 ARNT FEZF1 ZNF2 ZNF213 ZNF302 KLF13 SP3 ZNF662 REST ENSG00000273226 DENND4C RPS6P10 ENSG00000272842 RPS6 HAUS6 SCARNA8 RRAGA PIR34932 SAXO1
GH09I018726 Enhancer 0.6 ENCODE 13.3 +336.7 336744 1.9 ZNF680 ZFP64 ZNF140 ZNF266 ZNF623 ZNF781 ZNF518A ZNF697 ZNF555 POLR2A DENND4C ENSG00000273226 SCARNA8 HAUS6 RPS6 RAP1BP1 LOC105375985 ADAMTSL1
GH09I018705 Enhancer 0.6 ENCODE 11.7 +356.6 356643 3.1 ZNF148 STAT1 USF1 RXRA MAFG NFE2 HNF4A ZNF354B DENND4C ENSG00000273226 ADAMTSL1 SCARNA8 RAP1BP1 LOC102724102
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA8 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA8 gene promoter:

Genomic Locations for SCARNA8 Gene

Genomic Locations for SCARNA8 Gene
chr9:19,063,656-19,063,786
(GRCh38/hg38)
Size:
131 bases
Orientation:
Minus strand
chr9:19,063,654-19,063,784
(GRCh37/hg19)

Genomic View for SCARNA8 Gene

Genes around SCARNA8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA8 Gene

Proteins for SCARNA8 Gene

Post-translational modifications for SCARNA8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA8 Gene

Domains & Families for SCARNA8 Gene

Gene Families for SCARNA8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA8 Gene

Function for SCARNA8 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA8 Gene

Localization for SCARNA8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA8 Gene

Pathways & Interactions for SCARNA8 Gene

SuperPathways for SCARNA8 Gene

No Data Available

Interacting Proteins for SCARNA8 Gene

Gene Ontology (GO) - Biological Process for SCARNA8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA8 Gene

Drugs & Compounds for SCARNA8 Gene

No Compound Related Data Available

Transcripts for SCARNA8 Gene

mRNA/cDNA for SCARNA8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA8 Gene

No ASD Table

Relevant External Links for SCARNA8 Gene

GeneLoc Exon Structure for
SCARNA8
ECgene alternative splicing isoforms for
SCARNA8

Expression for SCARNA8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA8 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA8 Gene:

SCARNA8

SOURCE GeneReport for Unigene cluster for SCARNA8 Gene:

Hs.689635
genes like me logo Genes that share expression patterns with SCARNA8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA8 Gene

Orthologs for SCARNA8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA8 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA8 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA8 34
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA8 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scarna8 34
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA8 34
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCARNA8 34
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA8 34
  • 79 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SCARNA8 34
  • 72 (a)
OneToOne
Species where no ortholog for SCARNA8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA8 Gene

ENSEMBL:
Gene Tree for SCARNA8 (if available)
TreeFam:
Gene Tree for SCARNA8 (if available)

Paralogs for SCARNA8 Gene

No data available for Paralogs for SCARNA8 Gene

Variants for SCARNA8 Gene

Sequence variations from dbSNP and Humsavar for SCARNA8 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1001702320 -- 19,063,977(-) T/A upstream_transcript_variant
rs1001798937 -- 19,063,809(-) C/T upstream_transcript_variant
rs1001906479 -- 19,064,957(-) G/A upstream_transcript_variant
rs1003377952 -- 19,065,089(-) G/A upstream_transcript_variant
rs1003492989 -- 19,064,848(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA8 Gene

Variant ID Type Subtype PubMed ID
nsv1161845 CNV duplication 26073780

Additional Variant Information for SCARNA8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA8 Gene

Disorders for SCARNA8 Gene

Additional Disease Information for SCARNA8

No disorders were found for SCARNA8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA8 Gene

Publications for SCARNA8 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 2 3 58
  2. hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase. (PMID: 16601202) Hoareau-Aveilla C … Henry Y (RNA (New York, N.Y.) 2006) 3 58

Products for SCARNA8 Gene

Sources for SCARNA8 Gene

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