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Aliases for SCARNA7 Gene

Subcategory (RNA class) for SCARNA7 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA7 Gene

  • Small Cajal Body-Specific RNA 7 2 3
  • U90 3

External Ids for SCARNA7 Gene

ORGUL Members for SCARNA7 Gene

Previous GeneCards Identifiers for SCARNA7 Gene

  • GC03M161716
  • GC03M160232
  • GC03M157631

Summaries for SCARNA7 Gene

GeneCards Summary for SCARNA7 Gene

SCARNA7 (Small Cajal Body-Specific RNA 7) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA7 Gene

Genomics for SCARNA7 Gene

Regulatory Elements for SCARNA7 Gene

Genomic Location for SCARNA7 Gene

Start:
160,514,907 bp from pter
End:
160,515,236 bp from pter
Size:
330 bases
Orientation:
Minus strand

Genomic View for SCARNA7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA7 Gene

Proteins for SCARNA7 Gene

Post-translational modifications for SCARNA7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA7 Gene

Domains for SCARNA7 Gene

Gene Families for SCARNA7 Gene

HGNC:
  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA7 Gene

Function for SCARNA7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA7 Gene

Localization for SCARNA7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA7 Gene

Pathways for SCARNA7 Gene

SuperPathways for SCARNA7 Gene

No Data Available

Interacting Proteins for SCARNA7 Gene

Gene Ontology (GO) - Biological Process for SCARNA7 Gene

None

No data available for Pathways by source for SCARNA7 Gene

Transcripts for SCARNA7 Gene

mRNA/cDNA for SCARNA7 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA7 Gene

Small Cajal body-specific RNA 7:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA7

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA7 Gene

No ASD Table

Relevant External Links for SCARNA7 Gene

GeneLoc Exon Structure for
SCARNA7
ECgene alternative splicing isoforms for
SCARNA7

Expression for SCARNA7 Gene

mRNA expression in normal human tissues for SCARNA7 Gene

SOURCE GeneReport for Unigene cluster for SCARNA7 Gene Hs.675953

genes like me logo Genes that share expressions with SCARNA7: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA7 Gene

Orthologs for SCARNA7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA7 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA7 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA7 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22009 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA7 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA7 36
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCARNA7 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA7 36
  • 60 (a)
OneToOne
Species with no ortholog for SCARNA7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA7 Gene

ENSEMBL:
Gene Tree for SCARNA7 (if available)
TreeFam:
Gene Tree for SCARNA7 (if available)

Paralogs for SCARNA7 Gene

No data available for Paralogs for SCARNA7 Gene

Variants for SCARNA7 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA7 Gene

Variant ID Type Subtype PubMed ID
nsv877700 CNV Loss 21882294
nsv877701 CNV Loss 21882294

Relevant External Links for SCARNA7 Gene

HapMap Linkage Disequilibrium report
SCARNA7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA7 Gene

Disorders for SCARNA7 Gene

No disorders were found for SCARNA7 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA7 Gene

Publications for SCARNA7 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 2 3

Products for SCARNA7 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA7
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA7
    • Block miRNA regulation of SCARNA7 using miScript Target Protectors

    Sources for SCARNA7 Gene

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