Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA7 Gene

Subcategory (RNA class) for SCARNA7 Gene


Quality Score for this RNA gene is


Aliases for SCARNA7 Gene

  • Small Cajal Body-Specific RNA 7 2 3 5
  • U90 3

External Ids for SCARNA7 Gene

ORGUL Members for SCARNA7 Gene

Previous GeneCards Identifiers for SCARNA7 Gene

  • GC03M161716
  • GC03M160232
  • GC03M157631

Summaries for SCARNA7 Gene

GeneCards Summary for SCARNA7 Gene

SCARNA7 (Small Cajal Body-Specific RNA 7) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA7 Gene

Genomics for SCARNA7 Gene

Regulatory Elements for SCARNA7 Gene

Enhancers for SCARNA7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H160446 1.6 Ensembl ENCODE dbSUPER 10.3 +65.8 65797 5.3 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143 FOS RPL23AP42 B3GAT3P1 TRIM59 SCARNA7 SMC4 ENSG00000248710 GC03P160413
GH03H160460 0.7 FANTOM5 dbSUPER 10.5 +55.0 54970 0.2 ZFP64 TRIM59 SCARNA7 PIR52189 GC03P160455 GC03P160454 GC03M160475
GH03H160457 0.6 dbSUPER 10.3 +56.9 56867 1.9 TCF12 PKNOX1 FOXK2 GATA2 SMARCA4 TAL1 DPF2 TRIM59 SCARNA7 B3GAT3P1 IFT80 GC03P160454 PIR52189 GC03P160455 GC03M160475
GH03H160452 0.6 dbSUPER 10.3 +62.1 62085 1.9 ZNF589 NR4A1 ZMYM3 ZBTB33 MGA NR2C2 TRIM59 SCARNA7 B3GAT3P1 IFT80 PIR52189 GC03P160455 GC03P160454 GC03M160475
GH03H160461 0.4 dbSUPER 10.7 +50.7 50677 6.8 HLF B3GAT3P1 TRIM59 SCARNA7 IFT80 SMC4 SPTSSB GC03M160475 GC03P160454 GC03P160455 PIR52189
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCARNA7 Gene

Genomic Locations for SCARNA7 Gene
330 bases
Minus strand

Genomic View for SCARNA7 Gene

Genes around SCARNA7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA7 Gene

Proteins for SCARNA7 Gene

Post-translational modifications for SCARNA7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA7 Gene

Domains & Families for SCARNA7 Gene

Gene Families for SCARNA7 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA7 Gene

Function for SCARNA7 Gene

Phenotypes From GWAS Catalog for SCARNA7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA7 Gene

Localization for SCARNA7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA7 Gene

Pathways & Interactions for SCARNA7 Gene

SuperPathways for SCARNA7 Gene

No Data Available

Interacting Proteins for SCARNA7 Gene

Gene Ontology (GO) - Biological Process for SCARNA7 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA7 Gene

Drugs & Compounds for SCARNA7 Gene

No Compound Related Data Available

Transcripts for SCARNA7 Gene

mRNA/cDNA for SCARNA7 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA7 Gene

Small Cajal body-specific RNA 7:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA7 Gene

No ASD Table

Relevant External Links for SCARNA7 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA7 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA7 Gene:


SOURCE GeneReport for Unigene cluster for SCARNA7 Gene:

genes like me logo Genes that share expression patterns with SCARNA7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA7 Gene

Orthologs for SCARNA7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA7 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCARNA7 34
  • 99 (a)
(Canis familiaris)
Mammalia SCARNA7 34
  • 91 (a)
(Bos Taurus)
Mammalia SCARNA7 34
  • 86 (a)
(Mus musculus)
Mammalia Gm22009 34
  • 83 (a)
(Monodelphis domestica)
Mammalia SCARNA7 34
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA7 34
  • 72 (a)
(Gallus gallus)
Aves SCARNA7 34
  • 68 (a)
(Anolis carolinensis)
Reptilia SCARNA7 34
  • 60 (a)
Species where no ortholog for SCARNA7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA7 Gene

Gene Tree for SCARNA7 (if available)
Gene Tree for SCARNA7 (if available)

Paralogs for SCARNA7 Gene

No data available for Paralogs for SCARNA7 Gene

Variants for SCARNA7 Gene

Sequence variations from dbSNP and Humsavar for SCARNA7 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1001473157 -- 160,516,791(+) AAAAC(A/T)TAGTG intron-variant, upstream-variant-2KB
rs1001634852 -- 160,516,518(+) CTCAC(A/G)CCTGT intron-variant, upstream-variant-2KB
rs1002371539 -- 160,514,435(+) AGTGT(A/G)GCTCA intron-variant, downstream-variant-500B
rs1006055793 -- 160,515,949(+) GTACC(C/T)TATAA intron-variant, upstream-variant-2KB
rs1006162858 -- 160,516,916(+) TTTTA(C/T)TCCTC intron-variant, upstream-variant-2KB

Relevant External Links for SCARNA7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA7 Gene

Disorders for SCARNA7 Gene

Relevant External Links for SCARNA7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SCARNA7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA7 Gene

Publications for SCARNA7 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 2 3 60

Products for SCARNA7 Gene

Sources for SCARNA7 Gene

Loading form....