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Aliases for SCARNA6 Gene

Subcategory (RNA class) for SCARNA6 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SCARNA6 Gene

  • Small Cajal Body-Specific RNA 6 2 3
  • U88 3

External Ids for SCARNA6 Gene

Previous GeneCards Identifiers for SCARNA6 Gene

  • GC02P233862
  • GC02P234228
  • GC02P225998
  • GC02P234246
  • GC02P234257

Summaries for SCARNA6 Gene

GeneCards Summary for SCARNA6 Gene

SCARNA6 (Small Cajal Body-Specific RNA 6) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA6 Gene

Genomics for SCARNA6 Gene

Regulatory Elements for SCARNA6 Gene

Genomic Location for SCARNA6 Gene

233,288,676 bp from pter
233,288,941 bp from pter
266 bases
Plus strand

Genomic View for SCARNA6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA6 Gene

ORGUL Member Location for SCARNA6 Gene

ORGUL Member Location for SCARNA6 gene

Proteins for SCARNA6 Gene

Post-translational modifications for SCARNA6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA6 Gene

Domains & Families for SCARNA6 Gene

Gene Families for SCARNA6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA6 Gene

Function for SCARNA6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA6 Gene

Localization for SCARNA6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA6 Gene

Pathways & Interactions for SCARNA6 Gene

SuperPathways for SCARNA6 Gene

No Data Available

Interacting Proteins for SCARNA6 Gene

Gene Ontology (GO) - Biological Process for SCARNA6 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA6 Gene

Drugs & Compounds for SCARNA6 Gene

No Compound Related Data Available

Transcripts for SCARNA6 Gene

mRNA/cDNA for SCARNA6 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA6 Gene

Small Cajal body-specific RNA 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA6 Gene

No ASD Table

Relevant External Links for SCARNA6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA6 Gene

mRNA expression in normal human tissues for SCARNA6 Gene

SOURCE GeneReport for Unigene cluster for SCARNA6 Gene Hs.689637

genes like me logo Genes that share expression patterns with SCARNA6: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA6 Gene

Orthologs for SCARNA6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA6 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Scarna6 16
Scarna6 36
  • 78 (a)
(Bos Taurus)
Mammalia SCARNA6 36
  • 69 (a)
(Canis familiaris)
Mammalia SCARNA6 36
  • 73 (a)
(Monodelphis domestica)
Mammalia SCARNA6 36
  • 59 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA6 36
  • 64 (a)
(Pan troglodytes)
Mammalia SCARNA6 36
  • 99 (a)
(Gallus gallus)
Aves SCARNA6 36
  • 56 (a)
(Anolis carolinensis)
Reptilia SCARNA6 36
  • 58 (a)
(Danio rerio)
Actinopterygii SCARNA6 36
  • 47 (a)
Species with no ortholog for SCARNA6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA6 Gene

Gene Tree for SCARNA6 (if available)
Gene Tree for SCARNA6 (if available)

Paralogs for SCARNA6 Gene

No data available for Paralogs for SCARNA6 Gene

Variants for SCARNA6 Gene

Relevant External Links for SCARNA6 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA6 Gene

Disorders for SCARNA6 Gene

Relevant External Links for SCARNA6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SCARNA6: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA6 Gene

Publications for SCARNA6 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 2 67

Products for SCARNA6 Gene

Sources for SCARNA6 Gene

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