Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA5 Gene

Subcategory (RNA class) for SCARNA5 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA5 Gene

  • Small Cajal Body-Specific RNA 5 2 3
  • U87 3

External Ids for SCARNA5 Gene

ORGUL Members for SCARNA5 Gene

Summaries for SCARNA5 Gene

GeneCards Summary for SCARNA5 Gene

SCARNA5 (Small Cajal Body-Specific RNA 5) is a RNA Gene, and belongs to scaRNA RNA class. Diseases associated with SCARNA5 include crohns disease.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA5 Gene

Genomics for SCARNA5 Gene

Genomic Location for SCARNA5 Gene

Start:
233,275,726 bp from pter
End:
233,276,003 bp from pter
Size:
278 bases
Orientation:
Plus strand

Genomic View for SCARNA5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA5 Gene

Regulatory Elements for SCARNA5 Gene

Proteins for SCARNA5 Gene

Post-translational modifications for SCARNA5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA5 Gene

Domains for SCARNA5 Gene

Gene Families for SCARNA5 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SCARNA5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SCARNA5 Gene

Function for SCARNA5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA5 Gene

Localization for SCARNA5 Gene

No data available for Gene Ontology (GO) - Cellular Components for SCARNA5 Gene

Pathways for SCARNA5 Gene

SuperPathways for SCARNA5 Gene

No Data Available

Interacting Proteins for SCARNA5 Gene

Gene Ontology (GO) - Biological Process for SCARNA5 Gene

None

No data available for Pathways by source for SCARNA5 Gene

Transcripts for SCARNA5 Gene

mRNA/cDNA for SCARNA5 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA5 Gene

Small Cajal body-specific RNA 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA5 Gene

No ASD Table

Relevant External Links for SCARNA5 Gene

GeneLoc Exon Structure for
SCARNA5
ECgene alternative splicing isoforms for
SCARNA5

Expression for SCARNA5 Gene

mRNA expression in normal human tissues for SCARNA5 Gene

SOURCE GeneReport for Unigene cluster for SCARNA5 Gene Hs.663619

genes like me logo Genes that share expressions with SCARNA5: view

Orthologs for SCARNA5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA6 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA6 37
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA6 37
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25395 37
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA6 37
  • 60 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA6 37
  • 55 (a)
ManyToMany
SCARNA6 37
  • 51 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SCARNA6 37
  • 55 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SCARNA6 37
  • 58 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SCARNA6 37
  • 52 (a)
ManyToMany
Species with no ortholog for SCARNA5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA5 Gene

ENSEMBL:
Gene Tree for SCARNA5 (if available)
TreeFam:
Gene Tree for SCARNA5 (if available)

Paralogs for SCARNA5 Gene

No data available for Paralogs for SCARNA5 Gene

Variants for SCARNA5 Gene

Relevant External Links for SCARNA5 Gene

HapMap Linkage Disequilibrium report
SCARNA5

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SCARNA5 Gene

Disorders for SCARNA5 Gene

(1) MalaCards Diseases for SCARNA5 Gene

Search for SCARNA5 Gene in MalaCards »
genes like me logo Genes that share disorders with SCARNA5: view

No data available for UniProtKB/Swiss-Prot for SCARNA5 Gene

Publications for SCARNA5 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 2 3
  2. U87 RNA, a novel C/D box small nucleolar RNA from mammalian cells. (PMID: 12119114) Gogolevskaya I.K. … Kramerov D.A. (Gene 2002) 3
  3. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. (PMID: 12912925) Richard P. … Kiss T. (EMBO J. 2003) 3
  4. Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis. (PMID: 17435756) Rioux J.D. … Brant S.R. (Nat. Genet. 2007) 3
  5. Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease. (PMID: 20570966) McGovern D.P. … Rotter J.I. (Hum. Mol. Genet. 2010) 3

Products for SCARNA5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA5
    • Block miRNA regulation of SCARNA5 using miScript Target Protectors

    Sources for SCARNA5 Gene

    Back to Top

    Content