Aliases for SCARNA5 Gene
Subcategory (RNA class) for SCARNA5 Gene
non-coding RNA
Quality Score for this RNA gene is
3
External Ids for SCARNA5 Gene
- HGNC: 32561
- Entrez Gene: 677775
- Ensembl: ENSG00000252010
- OMIM: 615640
Previous GeneCards Identifiers for SCARNA5 Gene
- GC02P233849
- GC02P234184
- GC02P225985
Summaries for SCARNA5 Gene
GeneCards Summary for SCARNA5 Gene
SCARNA5 (Small Cajal Body-Specific RNA 5) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for SCARNA5 Gene
- Monarch Initiative
- Search for SCARNA5 at DataMed
- Search for SCARNA5 at HumanCyc
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA5 Gene
Genomics for SCARNA5 Gene
GeneHancer (GH) Regulatory Elements for SCARNA5 Gene
Promoters and enhancers for SCARNA5 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around SCARNA5 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for SCARNA5 Gene
Genomic Locations for SCARNA5 Gene
- chr2:233,275,726-233,276,003
- (GRCh38/hg38)
- Size:
- 278 bases
- Orientation:
- Plus strand
- chr2:234,184,372-234,184,649
- (GRCh37/hg19)
Genomic View for SCARNA5 Gene
Genes around SCARNA5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q37.1 by Ensembl
- 2q37.1 by Entrez Gene
- 2q37.1 by HGNC
SCARNA5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)


RefSeq DNA sequence for SCARNA5 Gene
Proteins for SCARNA5 Gene
Post-translational modifications for SCARNA5 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SCARNA5
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA5
- Origene Custom Protein Services for SCARNA5
- Search GeneTex for Proteins for SCARNA5
No data available for DME Specific Peptides for SCARNA5 Gene
Domains & Families for SCARNA5 Gene
Gene Families for SCARNA5 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA5 Gene
Function for SCARNA5 Gene
Phenotypes From GWAS Catalog for SCARNA5 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SCARNA5
-
- Search ViGene Biosciences for SCARNA5
CRISPR Products
- Browse CRISPR knockouts for SCARNA5
- Applied Biological Materials CRISPR for SCARNA5
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for SCARNA5
Inhibitory RNA Products
- Search ViGene Biosciences for SCARNA5
Clone Products
- GenScript: Custom all cDNA clones Services for SCARNA5
- VectorBuilder custom plasmid, inducible vectors for SCARNA5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SCARNA5
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SCARNA5
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA5 Gene
Localization for SCARNA5 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA5 Gene
Transcripts for SCARNA5 Gene
mRNA/cDNA for SCARNA5 Gene
- (1) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for SCARNA5 Gene
CRISPR Products
- Browse CRISPR knockouts for SCARNA5
- Applied Biological Materials CRISPR for SCARNA5
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for SCARNA5
Inhibitory RNA Products
- Search ViGene Biosciences for SCARNA5
Clone Products
- GenScript: Custom all cDNA clones Services for SCARNA5
- VectorBuilder custom plasmid, inducible vectors for SCARNA5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SCARNA5
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SCARNA5
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for SCARNA5 Gene
NURSA nuclear receptor signaling pathways regulating expression of SCARNA5 Gene:
SCARNA5SOURCE GeneReport for Unigene cluster for SCARNA5 Gene:
Hs.663619Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA5 Gene
Orthologs for SCARNA5 Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | SCARNA6 34 |
|
OneToOne | |
cow (Bos Taurus) |
Mammalia | SCARNA6 34 |
|
OneToOne | |
dog (Canis familiaris) |
Mammalia | SCARNA6 34 |
|
OneToOne | |
mouse (Mus musculus) |
Mammalia | Gm25395 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | SCARNA6 34 |
|
OneToMany | |
platypus (Ornithorhynchus anatinus) |
Mammalia | SCARNA6 34 34 |
|
ManyToMany | |
chicken (Gallus gallus) |
Aves | SCARNA6 34 |
|
OneToMany | |
lizard (Anolis carolinensis) |
Reptilia | SCARNA6 34 |
|
OneToMany | |
zebrafish (Danio rerio) |
Actinopterygii | SCARNA6 34 |
|
ManyToMany |
- Species where no ortholog for SCARNA5 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for SCARNA5 Gene
No data available for Paralogs for SCARNA5 Gene
Variants for SCARNA5 Gene
SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs2241880 | risk-factor, benign, Inflammatory bowel disease 10, susceptibility to, not specified | 233,274,722(+) | A/G | upstream_transcript_variant | |
rs1000814412 | -- | 233,275,575(+) | T/C | upstream_transcript_variant | |
rs1001099583 | -- | 233,275,203(+) | G/A | upstream_transcript_variant | |
rs1001987388 | -- | 233,275,915(+) | G/A | non_coding_transcript_variant | |
rs1002014188 | -- | 233,273,868(+) | G/T | upstream_transcript_variant |
Additional Variant Information for SCARNA5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SCARNA5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA5 Gene
Disorders for SCARNA5 Gene
Additional Disease Information for SCARNA5
No disorders were found for SCARNA5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA5 Gene
Publications for SCARNA5 Gene
- Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 2 3 58
- A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300. (PMID: 22936669) Julià A … Marsal S (Gut 2013) 3 58
- A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny EE … Peter I (PLoS genetics 2012) 3 58
- Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
- Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease. (PMID: 20570966) McGovern DP … International IBD Genetics Consortium (Human molecular genetics 2010) 3 58
Products for SCARNA5 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SCARNA5
- Origene Custom Protein Services for SCARNA5
- Browse OriGene Inhibitory RNA Products For SCARNA5
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SCARNA5
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SCARNA5
- GenScript: Custom all cDNA clones Services for SCARNA5
- GenScript Custom Purified and Recombinant Proteins Services for SCARNA5
- GenScript Custom Assay Services for SCARNA5
- GenScript Custom overexpressing Cell Line Services for SCARNA5
- Browse GenScript CRISPR for SCARNA5
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
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- Browse Sino Biological cDNA Clones
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for SCARNA5
- VectorBuilder custom plasmid, inducible vectors for SCARNA5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SCARNA5
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for SCARNA5
- Search GeneTex for Proteins for SCARNA5
Sources for SCARNA5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew