Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA5 Gene

Subcategory (RNA class) for SCARNA5 Gene


Quality Score for this RNA gene is


Aliases for SCARNA5 Gene

  • Small Cajal Body-Specific RNA 5 2 3
  • U87 3

External Ids for SCARNA5 Gene

ORGUL Members for SCARNA5 Gene

Previous GeneCards Identifiers for SCARNA5 Gene

  • GC02P233849
  • GC02P234184
  • GC02P225985

Summaries for SCARNA5 Gene

GeneCards Summary for SCARNA5 Gene

SCARNA5 (Small Cajal Body-Specific RNA 5) is an RNA Gene, and is affiliated with the scaRNA class. Diseases associated with SCARNA5 include crohn's disease.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA5 Gene

Genomics for SCARNA5 Gene

Regulatory Elements for SCARNA5 Gene

Genomic Location for SCARNA5 Gene

233,275,726 bp from pter
233,276,003 bp from pter
278 bases
Plus strand

Genomic View for SCARNA5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA5 Gene

Proteins for SCARNA5 Gene

Post-translational modifications for SCARNA5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA5 Gene

Domains for SCARNA5 Gene

Gene Families for SCARNA5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA5 Gene

Function for SCARNA5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA5 Gene

Localization for SCARNA5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA5 Gene

Pathways for SCARNA5 Gene

SuperPathways for SCARNA5 Gene

No Data Available

Interacting Proteins for SCARNA5 Gene

Gene Ontology (GO) - Biological Process for SCARNA5 Gene


No data available for Pathways by source for SCARNA5 Gene

Transcripts for SCARNA5 Gene

mRNA/cDNA for SCARNA5 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA5 Gene

Small Cajal body-specific RNA 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA5 Gene

No ASD Table

Relevant External Links for SCARNA5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA5 Gene

mRNA expression in normal human tissues for SCARNA5 Gene

SOURCE GeneReport for Unigene cluster for SCARNA5 Gene Hs.663619

genes like me logo Genes that share expressions with SCARNA5: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SCARNA5 Gene

Orthologs for SCARNA5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA5 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SCARNA6 36
  • 84 (a)
(Canis familiaris)
Mammalia SCARNA6 36
  • 81 (a)
(Monodelphis domestica)
Mammalia SCARNA6 36
  • 60 (a)
(Mus musculus)
Mammalia Gm25395 36
  • 75 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA6 36
  • 55 (a)
  • 51 (a)
(Pan troglodytes)
Mammalia SCARNA6 36
  • 100 (a)
(Gallus gallus)
Aves SCARNA6 36
  • 55 (a)
(Anolis carolinensis)
Reptilia SCARNA6 36
  • 58 (a)
(Danio rerio)
Actinopterygii SCARNA6 36
  • 52 (a)
Species with no ortholog for SCARNA5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA5 Gene

Gene Tree for SCARNA5 (if available)
Gene Tree for SCARNA5 (if available)

Paralogs for SCARNA5 Gene

No data available for Paralogs for SCARNA5 Gene

Variants for SCARNA5 Gene

Relevant External Links for SCARNA5 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SCARNA5 Gene

Disorders for SCARNA5 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for SCARNA5 Gene in MalaCards »

(1) Disease for SCARNA5 Gene

genes like me logo Genes that share disorders with SCARNA5: view

No data available for OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SCARNA5 Gene

Publications for SCARNA5 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 2 3
  2. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. (PMID: 12912925) Richard P. … Kiss T. (EMBO J. 2003) 3
  3. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. (PMID: 21102463) Franke A. … Parkes M. (Nat. Genet. 2010) 3
  4. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny E.E. … Peter I. (PLoS Genet. 2012) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for SCARNA5 Gene

Sources for SCARNA5 Gene

Back to Top