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Aliases for SCARNA4 Gene

Subcategory (RNA class) for SCARNA4 Gene


Quality Score for this RNA gene is


Aliases for SCARNA4 Gene

  • Small Cajal Body-Specific RNA 4 2 3
  • ACA26 ScaRNA 3
  • ACA26 3

External Ids for SCARNA4 Gene

Previous GeneCards Identifiers for SCARNA4 Gene

  • GC01M154162
  • GC01M155895
  • GC01M127256

Summaries for SCARNA4 Gene

GeneCards Summary for SCARNA4 Gene

SCARNA4 (Small Cajal Body-Specific RNA 4) is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for SCARNA4 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

  • Small Cajal body specific RNA 15: scaRNAs are a specific class of small nuclear RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12 [1]. ACA45 belongs to the H/ACA box class of guide RNAs as it has the predicted hairpin-hinge-hairpin-tail structure, the conserved H/ACA-box motifs and is found associated with GAR1 [2]. ACA45 is predicted to guide the pseudouridylation of residue U37 of the U2 spliceosomal snRNA [2].

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA4 Gene

Genomics for SCARNA4 Gene

Regulatory Elements for SCARNA4 Gene

Genomic Location for SCARNA4 Gene

155,925,958 bp from pter
155,926,086 bp from pter
129 bases
Minus strand

Genomic View for SCARNA4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA4 Gene

ORGUL Member Location for SCARNA4 Gene

ORGUL Member Location for SCARNA4 gene

Proteins for SCARNA4 Gene

Post-translational modifications for SCARNA4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA4 Gene

Domains for SCARNA4 Gene

Gene Families for SCARNA4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA4 Gene

Function for SCARNA4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA4 Gene

Localization for SCARNA4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA4 Gene

Pathways for SCARNA4 Gene

SuperPathways for SCARNA4 Gene

No Data Available

Interacting Proteins for SCARNA4 Gene

Gene Ontology (GO) - Biological Process for SCARNA4 Gene


No data available for Pathways by source for SCARNA4 Gene

Transcripts for SCARNA4 Gene

mRNA/cDNA for SCARNA4 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA4 Gene

Small Cajal body-specific RNA 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA4 Gene

No ASD Table

Relevant External Links for SCARNA4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA4 Gene

mRNA expression in normal human tissues for SCARNA4 Gene

SOURCE GeneReport for Unigene cluster for SCARNA4 Gene Hs.678903

genes like me logo Genes that share expressions with SCARNA4: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SCARNA4 Gene

Orthologs for SCARNA4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA4 Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia SCARNA4 36
  • 87 (a)
(Monodelphis domestica)
Mammalia SCARNA4 36
  • 83 (a)
(Mus musculus)
Mammalia Gm25058 36
  • 84 (a)
Gm25820 36
  • 87 (a)
Gm25825 36
  • 68 (a)
Gm26039 36
  • 65 (a)
Gm26413 36
  • 80 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA4 36
  • 53 (a)
Species with no ortholog for SCARNA4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA4 Gene

Gene Tree for SCARNA4 (if available)
Gene Tree for SCARNA4 (if available)

Paralogs for SCARNA4 Gene

No data available for Paralogs for SCARNA4 Gene

Variants for SCARNA4 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA4 Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV Loss 17666407

Relevant External Links for SCARNA4 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA4 Gene

Disorders for SCARNA4 Gene

No disorders were found for SCARNA4 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SCARNA4 Gene

Publications for SCARNA4 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3
  2. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. (PMID: 12912925) Richard P. … Kiss T. (EMBO J. 2003) 3

Products for SCARNA4 Gene

Sources for SCARNA4 Gene

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