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Aliases for SCARNA3 Gene

Subcategory (RNA class) for SCARNA3 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA3 Gene

  • Small Cajal Body-Specific RNA 3 2 3
  • HBI-100 3

External Ids for SCARNA3 Gene

ORGUL Members for SCARNA3 Gene

Previous GeneCards Identifiers for SCARNA3 Gene

  • GC01M174204
  • GC01M147164

Summaries for SCARNA3 Gene

GeneCards Summary for SCARNA3 Gene

SCARNA3 (Small Cajal Body-Specific RNA 3) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA3 Gene

Genomics for SCARNA3 Gene

Genomic Location for SCARNA3 Gene

Start:
175,968,397 bp from pter
End:
175,968,540 bp from pter
Size:
144 bases
Orientation:
Minus strand

Genomic View for SCARNA3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA3 Gene

No data available for Regulatory Elements for SCARNA3 Gene

Proteins for SCARNA3 Gene

Post-translational modifications for SCARNA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA3 Gene

Domains for SCARNA3 Gene

Gene Families for SCARNA3 Gene

HGNC:
  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA3 Gene

Function for SCARNA3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA3 Gene

Localization for SCARNA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA3 Gene

Pathways for SCARNA3 Gene

SuperPathways for SCARNA3 Gene

No Data Available

Interacting Proteins for SCARNA3 Gene

Gene Ontology (GO) - Biological Process for SCARNA3 Gene

None

No data available for Pathways by source for SCARNA3 Gene

Transcripts for SCARNA3 Gene

mRNA/cDNA for SCARNA3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA3 Gene

No ASD Table

Relevant External Links for SCARNA3 Gene

GeneLoc Exon Structure for
SCARNA3
ECgene alternative splicing isoforms for
SCARNA3

Expression for SCARNA3 Gene

mRNA expression in normal human tissues for SCARNA3 Gene

genes like me logo Genes that share expressions with SCARNA3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA3 Gene

Orthologs for SCARNA3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA3 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA3 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA3 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22387 36
  • 71 (a)
OneToMany
Gm22416 36
  • 72 (a)
OneToMany
Gm24718 36
  • 71 (a)
OneToMany
Gm25119 36
  • 72 (a)
OneToMany
Scarna3a 16
Scarna3a 36
  • 86 (a)
OneToMany
Scarna3b 36
  • 86 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SCARNA3 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA3 36
  • 85 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCARNA3 36
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA3 36
  • 71 (a)
OneToOne
Species with no ortholog for SCARNA3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA3 Gene

ENSEMBL:
Gene Tree for SCARNA3 (if available)
TreeFam:
Gene Tree for SCARNA3 (if available)

Paralogs for SCARNA3 Gene

No data available for Paralogs for SCARNA3 Gene

Variants for SCARNA3 Gene

Relevant External Links for SCARNA3 Gene

HapMap Linkage Disequilibrium report
SCARNA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SCARNA3 Gene

Disorders for SCARNA3 Gene

No disorders were found for SCARNA3 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA3 Gene

Publications for SCARNA3 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 2 3
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for SCARNA3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA3
    • Block miRNA regulation of SCARNA3 using miScript Target Protectors

    Sources for SCARNA3 Gene

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