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Aliases for SCARNA27 Gene

Subcategory (RNA class) for SCARNA27 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SCARNA27 Gene

  • Small Cajal Body-Specific RNA 27 2 3

External Ids for SCARNA27 Gene

Previous GeneCards Identifiers for SCARNA27 Gene

  • GC06U901085

Summaries for SCARNA27 Gene

GeneCards Summary for SCARNA27 Gene

SCARNA27 (Small Cajal Body-Specific RNA 27) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA27 Gene

Genomics for SCARNA27 Gene

Regulatory Elements for SCARNA27 Gene

Enhancers for SCARNA27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F008079 1.3 FANTOM5 Ensembl ENCODE 0.8 +3.3 3265 7.7 MLX ARID4B FEZF1 ZNF2 YY1 SLC30A9 FOS ZNF263 SP3 SP5 RIOK1 ENSG00000225092 EEF1E1 BLOC1S5 SCARNA27 BLOC1S5-TXNDC5
GH06F008075 0.5 Ensembl 0.4 +10.5 10533 0.8 SOX13 ZNF644 RARA SOX5 GATAD2A TEAD1 HLF FOXA3 HMG20A PPARG EEF1E1 BLOC1S5 BLOC1S5-TXNDC5 SCARNA27
GH06F008076 0.9 Ensembl 0.4 +11.4 11433 0.2 EEF1E1 BLOC1S5 BLOC1S5-TXNDC5 SCARNA27
GH06F008063 1.1 ENCODE 0.3 +21.9 21853 2.8 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 LOC100422646 RIOK1 TXNDC5 BLOC1S5 BLOC1S5-TXNDC5 SCARNA27
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCARNA27 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA27 Gene

Chromosome:
6
Start:
8,086,408 bp from pter
End:
8,086,533 bp from pter
Size:
126 bases
Orientation:
Minus strand

Genomic View for SCARNA27 Gene

Genes around SCARNA27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA27 Gene

Proteins for SCARNA27 Gene

Post-translational modifications for SCARNA27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA27 Gene

Domains & Families for SCARNA27 Gene

Gene Families for SCARNA27 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA27 Gene

Function for SCARNA27 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA27 Gene

Localization for SCARNA27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA27 Gene

Pathways & Interactions for SCARNA27 Gene

SuperPathways for SCARNA27 Gene

No Data Available

Interacting Proteins for SCARNA27 Gene

Gene Ontology (GO) - Biological Process for SCARNA27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA27 Gene

Transcripts for SCARNA27 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA27 Gene

No ASD Table

Relevant External Links for SCARNA27 Gene

GeneLoc Exon Structure for
SCARNA27
ECgene alternative splicing isoforms for
SCARNA27

No data available for mRNA/cDNA for SCARNA27 Gene

Expression for SCARNA27 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA27 Gene:

SCARNA27
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA27 Gene

Orthologs for SCARNA27 Gene

No data available for Orthologs and Evolution for SCARNA27 Gene

Paralogs for SCARNA27 Gene

No data available for Paralogs for SCARNA27 Gene

Variants for SCARNA27 Gene

Sequence variations from dbSNP and Humsavar for SCARNA27 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs112837242 -- 8,087,507(+) GCCAC(C/T)GCGCC intron-variant, upstream-variant-2KB
rs114005648 -- 8,086,682(+) TTTCT(C/T)TGTAA intron-variant, upstream-variant-2KB
rs115163695 -- 8,086,949(+) AGACC(C/T)GAAGT intron-variant, upstream-variant-2KB
rs115745392 -- 8,086,354(+) ACCCA(G/T)ACTCA intron-variant, downstream-variant-500B
rs115880635 -- 8,087,077(+) AGTGG(A/G)GAGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA27 Gene

Variant ID Type Subtype PubMed ID
esv2731544 CNV deletion 23290073
nsv1133014 OTHER inversion 24896259
nsv1151332 OTHER inversion 26484159
nsv600924 CNV gain 21841781
nsv600927 CNV gain 21841781

Relevant External Links for SCARNA27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA27 Gene

Disorders for SCARNA27 Gene

Relevant External Links for SCARNA27

Genetic Association Database (GAD)
SCARNA27
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA27

No disorders were found for SCARNA27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA27 Gene

Publications for SCARNA27 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  4. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SCARNA27 Gene

Sources for SCARNA27 Gene

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