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Aliases for SCARNA23 Gene

Subcategory (RNA class) for SCARNA23 Gene


Quality Score for this RNA gene is


Aliases for SCARNA23 Gene

  • Small Cajal Body-Specific RNA 23 2 3 5
  • ACA12 ScaRNA 3
  • ACA12 3

External Ids for SCARNA23 Gene

ORGUL Members for SCARNA23 Gene

Previous GeneCards Identifiers for SCARNA23 Gene

  • GC0XP024672
  • GC0XP022505

Summaries for SCARNA23 Gene

GeneCards Summary for SCARNA23 Gene

SCARNA23 (Small Cajal Body-Specific RNA 23) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA23 Gene

Genomics for SCARNA23 Gene

Regulatory Elements for SCARNA23 Gene

Enhancers for SCARNA23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF024759 0.6 ENCODE 0.3 +16.7 16734 2.5 HIC1 ZFHX2 MTA2 TRIM22 FEZF1 MLLT1 BMI1 WT1 EGR2 PCYT1B GC0XM024764 SCARNA23
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA23 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA23 Gene

24,744,441 bp from pter
24,744,570 bp from pter
130 bases
Plus strand

Genomic View for SCARNA23 Gene

Genes around SCARNA23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA23 Gene

Proteins for SCARNA23 Gene

Post-translational modifications for SCARNA23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA23 Gene

Domains & Families for SCARNA23 Gene

Gene Families for SCARNA23 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA23 Gene

Function for SCARNA23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA23 Gene

Localization for SCARNA23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA23 Gene

Pathways & Interactions for SCARNA23 Gene

SuperPathways for SCARNA23 Gene

No Data Available

Interacting Proteins for SCARNA23 Gene

Gene Ontology (GO) - Biological Process for SCARNA23 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA23 Gene

Transcripts for SCARNA23 Gene

mRNA/cDNA for SCARNA23 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA23 Gene

Small Cajal body-specific RNA 23:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA23 Gene

No ASD Table

Relevant External Links for SCARNA23 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCARNA23 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA23 Gene:


SOURCE GeneReport for Unigene cluster for SCARNA23 Gene:

genes like me logo Genes that share expression patterns with SCARNA23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA23 Gene

Orthologs for SCARNA23 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA23 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCARNA24 35
  • 99 (a)
(Bos Taurus)
Mammalia SCARNA24 35
  • 93 (a)
(Canis familiaris)
Mammalia SCARNA24 35
  • 90 (a)
(Monodelphis domestica)
Mammalia SCARNA24 35
  • 74 (a)
(Mus musculus)
Mammalia Gm23557 35
  • 71 (a)
(Gallus gallus)
Aves SCARNA24 35
  • 69 (a)
(Danio rerio)
Actinopterygii SCARNA24 35
  • 52 (a)
Species where no ortholog for SCARNA23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA23 Gene

Gene Tree for SCARNA23 (if available)
Gene Tree for SCARNA23 (if available)

Paralogs for SCARNA23 Gene

No data available for Paralogs for SCARNA23 Gene

Variants for SCARNA23 Gene

Sequence variations from dbSNP and Humsavar for SCARNA23 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs113389221 -- 24,744,106(+) TGTAC(A/T)GTTCA intron-variant, upstream-variant-2KB
rs11573366 -- 24,743,646(+) TTAAG(A/C)TCATG intron-variant, upstream-variant-2KB
rs11573367 -- 24,744,913(+) CGCCA(C/T)GGCAC intron-variant, downstream-variant-500B
rs139024287 -- 24,743,234(+) GGGAG(A/G)TGAAG upstream-variant-2KB, reference, missense
rs142957270 -- 24,743,983(+) CACCT(C/T)TTGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA23 Gene

Variant ID Type Subtype PubMed ID
nsv517960 CNV gain 19592680

Relevant External Links for SCARNA23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA23 Gene

Disorders for SCARNA23 Gene

Relevant External Links for SCARNA23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SCARNA23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA23 Gene

Publications for SCARNA23 Gene

  1. Box H/ACA small ribonucleoproteins. (PMID: 20227365) Kiss T. … JA!dy B.E. (Mol. Cell 2010) 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3 64
  3. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3 64

Products for SCARNA23 Gene

Sources for SCARNA23 Gene

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