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Aliases for SCARNA23 Gene

Subcategory (RNA class) for SCARNA23 Gene


Quality Score for this RNA gene is


Aliases for SCARNA23 Gene

  • Small Cajal Body-Specific RNA 23 2 3
  • ACA12 ScaRNA 3
  • ACA12 3

External Ids for SCARNA23 Gene

ORGUL Members for SCARNA23 Gene

Previous GeneCards Identifiers for SCARNA23 Gene

  • GC0XP024672
  • GC0XP022505

Summaries for SCARNA23 Gene

GeneCards Summary for SCARNA23 Gene

SCARNA23 (Small Cajal Body-Specific RNA 23) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA23 Gene

Genomics for SCARNA23 Gene

Regulatory Elements for SCARNA23 Gene

Genomic Location for SCARNA23 Gene

24,744,441 bp from pter
24,744,570 bp from pter
130 bases
Plus strand

Genomic View for SCARNA23 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA23 Gene

Proteins for SCARNA23 Gene

Post-translational modifications for SCARNA23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA23 Gene

Domains for SCARNA23 Gene

Gene Families for SCARNA23 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA23 Gene

Function for SCARNA23 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA23 Gene

Localization for SCARNA23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA23 Gene

Pathways for SCARNA23 Gene

SuperPathways for SCARNA23 Gene

No Data Available

Interacting Proteins for SCARNA23 Gene

Gene Ontology (GO) - Biological Process for SCARNA23 Gene


No data available for Pathways by source for SCARNA23 Gene

Transcripts for SCARNA23 Gene

mRNA/cDNA for SCARNA23 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA23 Gene

Small Cajal body-specific RNA 23:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA23 Gene

No ASD Table

Relevant External Links for SCARNA23 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA23 Gene

mRNA expression in normal human tissues for SCARNA23 Gene

SOURCE GeneReport for Unigene cluster for SCARNA23 Gene Hs.689695

genes like me logo Genes that share expressions with SCARNA23: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SCARNA23 Gene

Orthologs for SCARNA23 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA23 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SCARNA24 36
  • 93 (a)
(Canis familiaris)
Mammalia SCARNA24 36
  • 90 (a)
(Monodelphis domestica)
Mammalia SCARNA24 36
  • 74 (a)
(Mus musculus)
Mammalia Gm23557 36
  • 71 (a)
(Pan troglodytes)
Mammalia SCARNA24 36
  • 99 (a)
(Gallus gallus)
Aves SCARNA24 36
  • 69 (a)
(Danio rerio)
Actinopterygii SCARNA24 36
  • 52 (a)
Species with no ortholog for SCARNA23:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA23 Gene

Gene Tree for SCARNA23 (if available)
Gene Tree for SCARNA23 (if available)

Paralogs for SCARNA23 Gene

No data available for Paralogs for SCARNA23 Gene

Variants for SCARNA23 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA23 Gene

Variant ID Type Subtype PubMed ID
nsv517960 CNV Gain 19592680

Relevant External Links for SCARNA23 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA23 Gene

Disorders for SCARNA23 Gene

No disorders were found for SCARNA23 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SCARNA23 Gene

Publications for SCARNA23 Gene

  1. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3
  3. Box H/ACA small ribonucleoproteins. (PMID: 20227365) Kiss T. … JA!dy B.E. (Mol. Cell 2010) 3

Products for SCARNA23 Gene

Sources for SCARNA23 Gene

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