Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA22 Gene

Subcategory (RNA class) for SCARNA22 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA22 Gene

  • Small Cajal Body-Specific RNA 22 2 3
  • ACA11 SnoRNA 3
  • ACA11 3

External Ids for SCARNA22 Gene

Summaries for SCARNA22 Gene

GeneCards Summary for SCARNA22 Gene

SCARNA22 (Small Cajal Body-Specific RNA 22) is a RNA Gene, and belongs to scaRNA RNA class. Diseases associated with SCARNA22 include multiple myeloma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA22 Gene

Genomics for SCARNA22 Gene

Genomic Location for SCARNA22 Gene

Start:
1,974,636 bp from pter
End:
1,974,760 bp from pter
Size:
125 bases
Orientation:
Plus strand

Genomic View for SCARNA22 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA22 Gene

Regulatory Elements for SCARNA22 Gene

Proteins for SCARNA22 Gene

Post-translational modifications for SCARNA22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA22 Gene

Domains for SCARNA22 Gene

Gene Families for SCARNA22 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SCARNA22: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SCARNA22 Gene

Function for SCARNA22 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA22 Gene

Localization for SCARNA22 Gene

No data available for Gene Ontology (GO) - Cellular Components for SCARNA22 Gene

Pathways for SCARNA22 Gene

SuperPathways for SCARNA22 Gene

No Data Available

Interacting Proteins for SCARNA22 Gene

Gene Ontology (GO) - Biological Process for SCARNA22 Gene

None

No data available for Pathways by source for SCARNA22 Gene

Transcripts for SCARNA22 Gene

mRNA/cDNA for SCARNA22 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA22 Gene

Small Cajal body-specific RNA 22:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA22 Gene

No ASD Table

Relevant External Links for SCARNA22 Gene

GeneLoc Exon Structure for
SCARNA22
ECgene alternative splicing isoforms for
SCARNA22

Expression for SCARNA22 Gene

mRNA expression in normal human tissues for SCARNA22 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA22 Gene

This gene is overexpressed in Testis (4.5).

SOURCE GeneReport for Unigene cluster for SCARNA22 Gene Hs.676951

genes like me logo Genes that share expressions with SCARNA22: view

Orthologs for SCARNA22 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA22 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA23 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA23 37
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA23 37
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22728 37
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA23 37
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCARNA23 37
  • 62 (a)
OneToOne
Species with no ortholog for SCARNA22:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA22 Gene

ENSEMBL:
Gene Tree for SCARNA22 (if available)
TreeFam:
Gene Tree for SCARNA22 (if available)

Paralogs for SCARNA22 Gene

No data available for Paralogs for SCARNA22 Gene

Variants for SCARNA22 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA22 Gene

Variant ID Type Subtype PubMed ID
nsv878328 CNV Loss 21882294
nsv878418 CNV Loss 21882294
nsv878419 CNV Loss 21882294

Relevant External Links for SCARNA22 Gene

HapMap Linkage Disequilibrium report
SCARNA22

No data available for Sequence variations from dbSNP and Humsavar for SCARNA22 Gene

Disorders for SCARNA22 Gene

(1) MalaCards Diseases for SCARNA22 Gene

Search for SCARNA22 Gene in MalaCards »
genes like me logo Genes that share disorders with SCARNA22: view

No data available for UniProtKB/Swiss-Prot for SCARNA22 Gene

Publications for SCARNA22 Gene

  1. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3

Products for SCARNA22 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA22
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA22
    • Block miRNA regulation of SCARNA22 using miScript Target Protectors

    Sources for SCARNA22 Gene

    Back to Top

    Content