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Aliases for SCARNA22 Gene

Subcategory (RNA class) for SCARNA22 Gene


Quality Score for this RNA gene is


Aliases for SCARNA22 Gene

  • Small Cajal Body-Specific RNA 22 2 3 5
  • ACA11 SnoRNA 3
  • ACA11 3

External Ids for SCARNA22 Gene

Previous GeneCards Identifiers for SCARNA22 Gene

  • GC04P001946
  • GC04P001977

Summaries for SCARNA22 Gene

GeneCards Summary for SCARNA22 Gene

SCARNA22 (Small Cajal Body-Specific RNA 22) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA22 Gene

Genomics for SCARNA22 Gene

Regulatory Elements for SCARNA22 Gene

Enhancers for SCARNA22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G002007 1.2 ENCODE 12.2 +34.6 34571 3.2 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZFP41 SSRP1 ZNF610 NELFA SCARNA22 C4orf48 NSD2 MXD4 ENSG00000251148 ZFYVE28 ENSG00000250623 CRIPAK POLN
GH04G002011 0.6 Ensembl 11.9 +37.2 37154 0.5 CEBPA HLF CEBPB ZBTB33 ZNF384 CEBPG C4orf48 NELFA SCARNA22 NSD2 MXD4 ENSG00000250623 ENSG00000251148 ZFYVE28 POLN HAUS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA22 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA22 Gene

1,974,636 bp from pter
1,974,760 bp from pter
125 bases
Plus strand

Genomic View for SCARNA22 Gene

Genes around SCARNA22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA22 Gene

Proteins for SCARNA22 Gene

Post-translational modifications for SCARNA22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA22 Gene

Domains & Families for SCARNA22 Gene

Gene Families for SCARNA22 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA22 Gene

Function for SCARNA22 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA22 Gene

Localization for SCARNA22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA22 Gene

Pathways & Interactions for SCARNA22 Gene

SuperPathways for SCARNA22 Gene

No Data Available

Interacting Proteins for SCARNA22 Gene

Gene Ontology (GO) - Biological Process for SCARNA22 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA22 Gene

Drugs & Compounds for SCARNA22 Gene

No Compound Related Data Available

Transcripts for SCARNA22 Gene

mRNA/cDNA for SCARNA22 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA22 Gene

Small Cajal body-specific RNA 22:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA22 Gene

No ASD Table

Relevant External Links for SCARNA22 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA22 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA22 Gene

This gene is overexpressed in Testis (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of SCARNA22 Gene:


SOURCE GeneReport for Unigene cluster for SCARNA22 Gene:

genes like me logo Genes that share expression patterns with SCARNA22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA22 Gene

Orthologs for SCARNA22 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA22 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCARNA23 35
  • 100 (a)
(Mus musculus)
Mammalia Gm22728 35
  • 82 (a)
(Bos Taurus)
Mammalia SCARNA23 35
  • 81 (a)
(Canis familiaris)
Mammalia SCARNA23 35
  • 81 (a)
(Monodelphis domestica)
Mammalia SCARNA23 35
  • 69 (a)
(Gallus gallus)
Aves SCARNA23 35
  • 62 (a)
Species where no ortholog for SCARNA22 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA22 Gene

Gene Tree for SCARNA22 (if available)
Gene Tree for SCARNA22 (if available)

Paralogs for SCARNA22 Gene

No data available for Paralogs for SCARNA22 Gene

Variants for SCARNA22 Gene

Sequence variations from dbSNP and Humsavar for SCARNA22 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs138946638 Likely benign 1,974,964(+) GGGGA(C/T)ACTCG downstream-variant-500B, reference, synonymous-codon
rs73069117 Likely benign 1,974,985(+) TTTGC(C/T)GTCTG downstream-variant-500B, reference, synonymous-codon
rs886059319 Uncertain significance 1,974,976(+) GTGGG(C/T)CTGTT downstream-variant-500B, reference, synonymous-codon
rs1001068443 -- 1,972,670(+) AGGAG(C/G/T)GGGGG intron-variant, upstream-variant-2KB
rs1003486993 -- 1,974,198(+) GCTGG(C/T)TTTCG intron-variant, upstream-variant-2KB

Relevant External Links for SCARNA22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA22 Gene

Disorders for SCARNA22 Gene

Relevant External Links for SCARNA22

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SCARNA22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA22 Gene

Publications for SCARNA22 Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H. … Gruber A.R. (Nucleic Acids Res. 2016) 3 64
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L. … Tomasson M.H. (J. Clin. Invest. 2012) 3 64
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 3 64

Products for SCARNA22 Gene

Sources for SCARNA22 Gene

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