Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA21 Gene

Subcategory (RNA class) for SCARNA21 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA21 Gene

  • Small Cajal Body-Specific RNA 21 2 3 5
  • SCARNA21A 3
  • ACA68 3

External Ids for SCARNA21 Gene

ORGUL Members for SCARNA21 Gene

Previous GeneCards Identifiers for SCARNA21 Gene

  • GC17P007750
  • GC17P007811
  • GC17P007812
  • GC17P007815
  • GC17P007819

Summaries for SCARNA21 Gene

GeneCards Summary for SCARNA21 Gene

SCARNA21 (Small Cajal Body-Specific RNA 21) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA21 Gene

Genomics for SCARNA21 Gene

Regulatory Elements for SCARNA21 Gene

Enhancers for SCARNA21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G007880 1.4 FANTOM5 Ensembl ENCODE dbSUPER 21.8 -24.6 -24605 1.8 HDGF TBP NFIC ZNF366 ZNF701 MNT PRDM1 CNTROB SCARNA21 CYB5D1 SNORD10 SNORA48 DVL2 CTC1 ENSG00000262089 TMEM88 ENSG00000265749
GH17G007931 1.2 ENCODE 21.8 +26.4 26371 2.8 CREB3L1 MLX DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 NLGN2 PFAS DVL2 CTC1 SCARNA21 VAMP2 MIR497HG KCNAB3 ATP1B2 SNORD10
GH17G007833 1.9 FANTOM5 ENCODE dbSUPER 10.3 -66.4 -66393 12.5 MLX CREB3L1 AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF416 ZNF143 ZNF548 DVL2 PFAS CTC1 NLGN2 SNORD10 PER1 SNORA48 KDM6B RPL26 VAMP2
GH17G008149 1.9 FANTOM5 ENCODE dbSUPER 10.2 +251.2 251197 16.0 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF416 ZNF143 ZNF263 DVL2 PER1 PFAS SENP3 CTC1 LOC100996842 ENSG00000265749 VAMP2 SNORD10 SNORA48
GH17G007474 1.8 FANTOM5 ENCODE dbSUPER 10.2 -425.5 -425533 12.5 CREB3L1 AGO1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 DVL2 CHRNB1 SNORD10 PFAS SNORA48 KCTD11 NEURL4 CTC1 CD68 FGF11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA21 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA21 Gene

Chromosome:
17
Start:
7,906,122 bp from pter
End:
7,906,260 bp from pter
Size:
139 bases
Orientation:
Plus strand

Genomic View for SCARNA21 Gene

Genes around SCARNA21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA21 Gene

Proteins for SCARNA21 Gene

Post-translational modifications for SCARNA21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA21 Gene

Domains & Families for SCARNA21 Gene

Gene Families for SCARNA21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA21 Gene

Function for SCARNA21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA21 Gene

Localization for SCARNA21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA21 Gene

Pathways & Interactions for SCARNA21 Gene

SuperPathways for SCARNA21 Gene

No Data Available

Interacting Proteins for SCARNA21 Gene

Gene Ontology (GO) - Biological Process for SCARNA21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA21 Gene

Drugs & Compounds for SCARNA21 Gene

No Compound Related Data Available

Transcripts for SCARNA21 Gene

mRNA/cDNA for SCARNA21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA21 Gene

No ASD Table

Relevant External Links for SCARNA21 Gene

GeneLoc Exon Structure for
SCARNA21
ECgene alternative splicing isoforms for
SCARNA21

Expression for SCARNA21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA21 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA21 Gene

This gene is overexpressed in Testis (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of SCARNA21 Gene:

SCARNA21
genes like me logo Genes that share expression patterns with SCARNA21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA21 Gene

Orthologs for SCARNA21 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA21 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22442 35
  • 79 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA21 35
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA21 35
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA21 35
  • 59 (a)
OneToMany
Species where no ortholog for SCARNA21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA21 Gene

ENSEMBL:
Gene Tree for SCARNA21 (if available)
TreeFam:
Gene Tree for SCARNA21 (if available)

Paralogs for SCARNA21 Gene

No data available for Paralogs for SCARNA21 Gene

Variants for SCARNA21 Gene

Sequence variations from dbSNP and Humsavar for SCARNA21 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1001395482 -- 7,904,329(+) AAGCT(G/T)CAGGA intron-variant, upstream-variant-2KB
rs1006490600 -- 7,905,741(+) CTCCA(A/C)GAGGG intron-variant, upstream-variant-2KB
rs1007822684 -- 7,904,847(+) CCCAG(A/G)GCCAT intron-variant, upstream-variant-2KB
rs1011049259 -- 7,906,495(+) CCTCA(C/T)TGCCC intron-variant, downstream-variant-500B
rs1011486022 -- 7,905,073(+) CCCTG(A/G)CCACT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA21 Gene

Variant ID Type Subtype PubMed ID
dgv510n67 CNV gain 20364138
nsv457660 CNV loss 19166990
nsv574333 CNV loss 21841781

Relevant External Links for SCARNA21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA21 Gene

Disorders for SCARNA21 Gene

Relevant External Links for SCARNA21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA21

No disorders were found for SCARNA21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA21 Gene

Publications for SCARNA21 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 2 3 64

Products for SCARNA21 Gene

Sources for SCARNA21 Gene

Content
Loading form....