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Aliases for SCARNA2 Gene

Subcategory (RNA class) for SCARNA2 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA2 Gene

  • Small Cajal Body-Specific RNA 2 2 3 5
  • MgU2-25/61 3
  • HBII-382 3

External Ids for SCARNA2 Gene

ORGUL Members for SCARNA2 Gene

Previous GeneCards Identifiers for SCARNA2 Gene

  • GC01P109444
  • GC01P109642
  • GC01P107536
  • GC01P109101
  • GC01P109105
  • GC01P109108
  • GC01P109110

Summaries for SCARNA2 Gene

GeneCards Summary for SCARNA2 Gene

SCARNA2 (Small Cajal Body-Specific RNA 2) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA2 Gene

Genomics for SCARNA2 Gene

GeneHancer (GH) Regulatory Elements for SCARNA2 Gene

Promoters and enhancers for SCARNA2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I109099 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 550.8 +0.4 357 2.1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D ENSG00000270066 GC01P109104 GC01P109116 SCARNA2 ENSG00000258634 RPL17P7 PRPF38B RPS27P6 GNAI3 C1orf194
GH01I109104 Enhancer 0.6 dbSUPER 0.8 +4.3 4324 0.6 IRF9 ZNF121 SMAD1 ZBTB6 POLR2A CEBPA CEBPB CEBPG LOC100420092 ENSG00000270066 SCARNA2
GH01I109103 Enhancer 0.4 dbSUPER 0.8 +3.3 3348 0.6 ZNF362 POLR2A PAX8 LOC100420092 C1orf194 ENSG00000270066 GC01P109116 SCARNA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA2 gene promoter:

Genomic Locations for SCARNA2 Gene

Genomic Locations for SCARNA2 Gene
chr1:109,100,193-109,100,612
(GRCh38/hg38)
Size:
420 bases
Orientation:
Plus strand
chr1:109,642,815-109,643,241
(GRCh37/hg19)

Genomic View for SCARNA2 Gene

Genes around SCARNA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA2 Gene

Proteins for SCARNA2 Gene

Post-translational modifications for SCARNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA2 Gene

Domains & Families for SCARNA2 Gene

Gene Families for SCARNA2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA2 Gene

Function for SCARNA2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA2 Gene

Localization for SCARNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA2 Gene

Pathways & Interactions for SCARNA2 Gene

SuperPathways for SCARNA2 Gene

No Data Available

Interacting Proteins for SCARNA2 Gene

Gene Ontology (GO) - Biological Process for SCARNA2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA2 Gene

Drugs & Compounds for SCARNA2 Gene

No Compound Related Data Available

Transcripts for SCARNA2 Gene

mRNA/cDNA for SCARNA2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA2 Gene

Small Cajal body-specific RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA2 Gene

No ASD Table

Relevant External Links for SCARNA2 Gene

GeneLoc Exon Structure for
SCARNA2
ECgene alternative splicing isoforms for
SCARNA2

Expression for SCARNA2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA2 Gene:

SCARNA2

SOURCE GeneReport for Unigene cluster for SCARNA2 Gene:

Hs.550815
genes like me logo Genes that share expression patterns with SCARNA2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA2 Gene

Orthologs for SCARNA2 Gene

Evolution for SCARNA2 Gene

ENSEMBL:
Gene Tree for SCARNA2 (if available)
TreeFam:
Gene Tree for SCARNA2 (if available)

No data available for Orthologs for SCARNA2 Gene

Paralogs for SCARNA2 Gene

No data available for Paralogs for SCARNA2 Gene

Variants for SCARNA2 Gene

Sequence variations from dbSNP and Humsavar for SCARNA2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000371216 -- 109,098,824(+) C/G upstream_transcript_variant
rs1002137157 -- 109,100,769(+) T/C/G downstream_transcript_variant
rs1003855027 -- 109,101,060(+) T/C downstream_transcript_variant
rs1004952017 -- 109,099,970(+) C/G upstream_transcript_variant
rs1006603560 -- 109,098,454(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA2 Gene

Variant ID Type Subtype PubMed ID
esv3894001 CNV gain 25118596
nsv1008458 CNV gain 25217958
nsv831026 CNV loss 17160897

Additional Variant Information for SCARNA2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA2 Gene

Disorders for SCARNA2 Gene

Additional Disease Information for SCARNA2

No disorders were found for SCARNA2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA2 Gene

Publications for SCARNA2 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 58
  2. The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region. (PMID: 19906720) Gérard MA … Carbon P (Nucleic acids research 2010) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SCARNA2 Gene

Sources for SCARNA2 Gene

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