Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA2 Gene

Subcategory (RNA class) for SCARNA2 Gene


Quality Score for this RNA gene is


Aliases for SCARNA2 Gene

  • Small Cajal Body-Specific RNA 2 2 3
  • MgU2-25/61 3
  • HBII-382 3

External Ids for SCARNA2 Gene

ORGUL Members for SCARNA2 Gene

Previous GeneCards Identifiers for SCARNA2 Gene

  • GC01P109444
  • GC01P109642
  • GC01P107536
  • GC01P109101

Summaries for SCARNA2 Gene

GeneCards Summary for SCARNA2 Gene

SCARNA2 (Small Cajal Body-Specific RNA 2) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA2 Gene

Genomics for SCARNA2 Gene

Regulatory Elements for SCARNA2 Gene

Genomic Location for SCARNA2 Gene

109,100,193 bp from pter
109,100,612 bp from pter
420 bases
Plus strand

Genomic View for SCARNA2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA2 Gene

Proteins for SCARNA2 Gene

Post-translational modifications for SCARNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA2 Gene

Domains & Families for SCARNA2 Gene

Gene Families for SCARNA2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA2 Gene

Function for SCARNA2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA2 Gene

Localization for SCARNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA2 Gene

Pathways & Interactions for SCARNA2 Gene

SuperPathways for SCARNA2 Gene

No Data Available

Interacting Proteins for SCARNA2 Gene

Gene Ontology (GO) - Biological Process for SCARNA2 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA2 Gene

Drugs & Compounds for SCARNA2 Gene

No Compound Related Data Available

Transcripts for SCARNA2 Gene

mRNA/cDNA for SCARNA2 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA2 Gene

Small Cajal body-specific RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA2 Gene

No ASD Table

Relevant External Links for SCARNA2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA2 Gene

mRNA expression in normal human tissues for SCARNA2 Gene

SOURCE GeneReport for Unigene cluster for SCARNA2 Gene Hs.550815

genes like me logo Genes that share expression patterns with SCARNA2: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA2 Gene

Orthologs for SCARNA2 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SCARNA2 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Scarna2 16
Species with no ortholog for SCARNA2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA2 Gene

Gene Tree for SCARNA2 (if available)
Gene Tree for SCARNA2 (if available)

Paralogs for SCARNA2 Gene

No data available for Paralogs for SCARNA2 Gene

Variants for SCARNA2 Gene

Sequence variations from dbSNP and Humsavar for SCARNA2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs523308 -- 109,100,679(+) GGGCG(A/G)GGATG downstream-variant-500B
rs534027 -- 109,100,758(+) TTTTT(C/G)GCCGC downstream-variant-500B
rs538694 -- 109,098,637(+) atagg(A/C)gacag upstream-variant-2KB
rs561729 -- 109,098,651(+) aagac(C/G)ctgtc upstream-variant-2KB
rs655833 -- 109,100,225(+) CCTGG(A/C/G)TGTTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA2 Gene

Variant ID Type Subtype PubMed ID
nsv831026 CNV Loss 17160897

Relevant External Links for SCARNA2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA2 Gene

Disorders for SCARNA2 Gene

Relevant External Links for SCARNA2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SCARNA2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA2 Gene

Publications for SCARNA2 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 67
  2. The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region. (PMID: 19906720) GAcrard M.A. … Carbon P. (Nucleic Acids Res. 2010) 67
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for SCARNA2 Gene

Sources for SCARNA2 Gene

Back to Top