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Aliases for SCARNA2 Gene

Subcategory (RNA class) for SCARNA2 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA2 Gene

  • Small Cajal Body-Specific RNA 2 5 2 3
  • MgU2-25/61 3
  • HBII-382 3

External Ids for SCARNA2 Gene

ORGUL Members for SCARNA2 Gene

Previous GeneCards Identifiers for SCARNA2 Gene

  • GC01P109444
  • GC01P109642
  • GC01P107536
  • GC01P109101
  • GC01P109105

Summaries for SCARNA2 Gene

GeneCards Summary for SCARNA2 Gene

SCARNA2 (Small Cajal Body-Specific RNA 2) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA2 Gene

Genomics for SCARNA2 Gene

Regulatory Elements for SCARNA2 Gene

Enhancers for SCARNA2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SCARNA2 on UCSC Golden Path with GeneCards custom track

Promoters for SCARNA2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SCARNA2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA2 Gene

Chromosome:
1
Start:
109,100,193 bp from pter
End:
109,100,612 bp from pter
Size:
420 bases
Orientation:
Plus strand

Genomic View for SCARNA2 Gene

Genes around SCARNA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA2 Gene

Proteins for SCARNA2 Gene

Post-translational modifications for SCARNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA2 Gene

Domains & Families for SCARNA2 Gene

Gene Families for SCARNA2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA2 Gene

Function for SCARNA2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA2 Gene

Localization for SCARNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA2 Gene

Pathways & Interactions for SCARNA2 Gene

SuperPathways for SCARNA2 Gene

No Data Available

Interacting Proteins for SCARNA2 Gene

Gene Ontology (GO) - Biological Process for SCARNA2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA2 Gene

Drugs & Compounds for SCARNA2 Gene

No Compound Related Data Available

Transcripts for SCARNA2 Gene

mRNA/cDNA for SCARNA2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA2 Gene

Small Cajal body-specific RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA2 Gene

No ASD Table

Relevant External Links for SCARNA2 Gene

GeneLoc Exon Structure for
SCARNA2
ECgene alternative splicing isoforms for
SCARNA2

Expression for SCARNA2 Gene

mRNA expression in normal human tissues for SCARNA2 Gene

SOURCE GeneReport for Unigene cluster for SCARNA2 Gene Hs.550815

genes like me logo Genes that share expression patterns with SCARNA2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA2 Gene

Orthologs for SCARNA2 Gene

Evolution for SCARNA2 Gene

ENSEMBL:
Gene Tree for SCARNA2 (if available)
TreeFam:
Gene Tree for SCARNA2 (if available)

No data available for Orthologs for SCARNA2 Gene

Paralogs for SCARNA2 Gene

No data available for Paralogs for SCARNA2 Gene

Variants for SCARNA2 Gene

Sequence variations from dbSNP and Humsavar for SCARNA2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs534027 -- 109,100,758(+) TTTTT(C/G)GCCGC downstream-variant-500B
rs538694 -- 109,098,637(+) atagg(A/C)gacag upstream-variant-2KB
rs561729 -- 109,098,651(+) aagac(C/G)ctgtc upstream-variant-2KB
rs523308 -- 109,100,679(+) GGGCG(A/G)GGATG downstream-variant-500B
rs655833 -- 109,100,225(+) CCTGG(A/C/G)TGTTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA2 Gene

Variant ID Type Subtype PubMed ID
nsv831026 CNV Loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SCARNA2 Gene

Disorders for SCARNA2 Gene

Relevant External Links for SCARNA2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA2

No disorders were found for SCARNA2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA2 Gene

Publications for SCARNA2 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 3 67
  2. The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region. (PMID: 19906720) GAcrard M.A. … Carbon P. (Nucleic Acids Res. 2010) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SCARNA2 Gene

Sources for SCARNA2 Gene

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