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Aliases for SCARNA2 Gene

Subcategory (RNA class) for SCARNA2 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA2 Gene

  • Small Cajal Body-Specific RNA 2 2 3 5
  • MgU2-25/61 3
  • HBII-382 3

External Ids for SCARNA2 Gene

ORGUL Members for SCARNA2 Gene

Previous GeneCards Identifiers for SCARNA2 Gene

  • GC01P109444
  • GC01P109642
  • GC01P107536
  • GC01P109101
  • GC01P109105
  • GC01P109108
  • GC01P109110

Summaries for SCARNA2 Gene

GeneCards Summary for SCARNA2 Gene

SCARNA2 (Small Cajal Body-Specific RNA 2) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA2 Gene

Genomics for SCARNA2 Gene

Regulatory Elements for SCARNA2 Gene

Enhancers for SCARNA2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F109167 1.1 Ensembl 10.5 +67.4 67408 1.2 SP1 ZFHX2 MTA2 EED IKZF1 CEBPB EBF1 PRDM1 GABPA EGR2 KIAA1324 SCARNA2 GC01M109207 C1orf194
GH01F109099 0.2 ENCODE 0.8 +0.3 279 1.9 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D ENSG00000258634 RPL17P7 RPS27P6 ENSG00000232971 SLC25A24P2 ENSG00000238122 ENSG00000235005 GNAI3 C1orf194 GSTM2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCARNA2 on UCSC Golden Path with GeneCards custom track

Promoters for SCARNA2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000670698 607 2400 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D

Genomic Location for SCARNA2 Gene

Chromosome:
1
Start:
109,100,193 bp from pter
End:
109,100,612 bp from pter
Size:
420 bases
Orientation:
Plus strand

Genomic View for SCARNA2 Gene

Genes around SCARNA2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA2 Gene

Proteins for SCARNA2 Gene

Post-translational modifications for SCARNA2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA2 Gene

Domains & Families for SCARNA2 Gene

Gene Families for SCARNA2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA2 Gene

Function for SCARNA2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA2 Gene

Localization for SCARNA2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA2 Gene

Pathways & Interactions for SCARNA2 Gene

SuperPathways for SCARNA2 Gene

No Data Available

Interacting Proteins for SCARNA2 Gene

Gene Ontology (GO) - Biological Process for SCARNA2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA2 Gene

Transcripts for SCARNA2 Gene

mRNA/cDNA for SCARNA2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SCARNA2 Gene

Small Cajal body-specific RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA2 Gene

No ASD Table

Relevant External Links for SCARNA2 Gene

GeneLoc Exon Structure for
SCARNA2
ECgene alternative splicing isoforms for
SCARNA2

Expression for SCARNA2 Gene

mRNA expression in normal human tissues for SCARNA2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA2 Gene:

SCARNA2

SOURCE GeneReport for Unigene cluster for SCARNA2 Gene:

Hs.550815
genes like me logo Genes that share expression patterns with SCARNA2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA2 Gene

Orthologs for SCARNA2 Gene

Evolution for SCARNA2 Gene

ENSEMBL:
Gene Tree for SCARNA2 (if available)
TreeFam:
Gene Tree for SCARNA2 (if available)

No data available for Orthologs for SCARNA2 Gene

Paralogs for SCARNA2 Gene

No data available for Paralogs for SCARNA2 Gene

Variants for SCARNA2 Gene

Sequence variations from dbSNP and Humsavar for SCARNA2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111570747 -- 109,098,513(+) AAGAA(-/AAA/AAG)AAAAA upstream-variant-2KB
rs112191371 -- 109,099,466(+) GGCCG(A/G)GCGCA upstream-variant-2KB
rs112611381 -- 109,100,633(+) TGCGG(G/T)CTGCC downstream-variant-500B
rs113055096 -- 109,098,666(+) ATAAG(-/TACA)TACAT upstream-variant-2KB
rs113151674 -- 109,100,244(+) GCTGT(A/C/G)GCGTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA2 Gene

Variant ID Type Subtype PubMed ID
esv3894001 CNV gain 25118596
nsv1008458 CNV gain 25217958
nsv831026 CNV loss 17160897

Relevant External Links for SCARNA2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA2 Gene

Disorders for SCARNA2 Gene

Relevant External Links for SCARNA2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA2

No disorders were found for SCARNA2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA2 Gene

Publications for SCARNA2 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 3 64
  2. The scaRNA2 is produced by an independent transcription unit and its processing is directed by the encoding region. (PMID: 19906720) GAcrard M.A. … Carbon P. (Nucleic Acids Res. 2010) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SCARNA2 Gene

Sources for SCARNA2 Gene

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