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Aliases for SCARNA18 Gene

Subcategory (RNA class) for SCARNA18 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA18 Gene

  • Small Cajal Body-Specific RNA 18 2 3 5
  • SCARNA18A 3
  • U109 3

External Ids for SCARNA18 Gene

ORGUL Members for SCARNA18 Gene

Previous GeneCards Identifiers for SCARNA18 Gene

  • GC05U900664
  • GC05M082395
  • GC05M077568

Summaries for SCARNA18 Gene

Entrez Gene Summary for SCARNA18 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SCARNA18, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

GeneCards Summary for SCARNA18 Gene

SCARNA18 (Small Cajal Body-Specific RNA 18) is an RNA Gene, and is affiliated with the scaRNA class.

Additional gene information for SCARNA18 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA18 Gene

Genomics for SCARNA18 Gene

Regulatory Elements for SCARNA18 Gene

Enhancers for SCARNA18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H083095 1.3 Ensembl ENCODE 10.4 -32.8 -32846 3 PKNOX1 ZNF133 FEZF1 GLI4 ZNF2 GLIS2 ZNF302 ATF7 KLF7 FOS XRCC4 ATP6AP1L VCAN-AS1 RPL13AP14 RPS23 SCARNA18 LOC105379052 TMEM167A RPL13P9
GH05H083034 0.8 Ensembl ENCODE 12.1 +28.7 28746 1 PKNOX1 PRDM6 POLR2A RCOR1 SCARNA18 LOC105379052 GC05M083024
GH05H083031 0.3 FANTOM5 12.1 +32.3 32333 0 SCARNA18 LOC105379052 GC05M083024
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA18 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA18 Gene

Chromosome:
5
Start:
83,064,204 bp from pter
End:
83,064,337 bp from pter
Size:
134 bases
Orientation:
Minus strand

Genomic View for SCARNA18 Gene

Genes around SCARNA18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA18 Gene

Proteins for SCARNA18 Gene

Post-translational modifications for SCARNA18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA18 Gene

Domains & Families for SCARNA18 Gene

Gene Families for SCARNA18 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA18 Gene

Function for SCARNA18 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCARNA18
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA18 Gene

Localization for SCARNA18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA18 Gene

Pathways & Interactions for SCARNA18 Gene

SuperPathways for SCARNA18 Gene

No Data Available

Interacting Proteins for SCARNA18 Gene

Gene Ontology (GO) - Biological Process for SCARNA18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA18 Gene

Drugs & Compounds for SCARNA18 Gene

No Compound Related Data Available

Transcripts for SCARNA18 Gene

mRNA/cDNA for SCARNA18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SCARNA18
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA18 Gene

No ASD Table

Relevant External Links for SCARNA18 Gene

GeneLoc Exon Structure for
SCARNA18
ECgene alternative splicing isoforms for
SCARNA18

Expression for SCARNA18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA18 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA18 Gene:

SCARNA18

SOURCE GeneReport for Unigene cluster for SCARNA18 Gene:

Hs.693283
genes like me logo Genes that share expression patterns with SCARNA18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA18 Gene

Orthologs for SCARNA18 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoU109 34
  • 99 (a)
OneToOne
chicken
(Gallus gallus)
Aves snoU109 34
  • 73 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia snoU109 34
  • 69 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoU109 34 34
  • 55 (a)
ManyToMany
Species where no ortholog for SCARNA18 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA18 Gene

ENSEMBL:
Gene Tree for SCARNA18 (if available)
TreeFam:
Gene Tree for SCARNA18 (if available)

Paralogs for SCARNA18 Gene

No data available for Paralogs for SCARNA18 Gene

Variants for SCARNA18 Gene

Sequence variations from dbSNP and Humsavar for SCARNA18 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000323602 -- 83,064,011(+) AAAAA(C/G)ATGTA intron-variant, downstream-variant-500B
rs1002661590 -- 83,065,202(+) GAGTC(A/G)TGTTT intron-variant, upstream-variant-2KB
rs1003017497 -- 83,065,515(+) TTCAC(C/T)GTTGG intron-variant, upstream-variant-2KB
rs1005101961 -- 83,064,907(+) AACCA(A/G)ATTAC intron-variant, upstream-variant-2KB
rs1005331917 -- 83,064,689(+) AGAGA(A/C)GACAG intron-variant, upstream-variant-2KB

Relevant External Links for SCARNA18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCARNA18 Gene

Disorders for SCARNA18 Gene

Relevant External Links for SCARNA18

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA18

No disorders were found for SCARNA18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA18 Gene

Publications for SCARNA18 Gene

  1. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 2 3 60
  2. Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance. (PMID: 25057126) Ramos YF … Meulenbelt I (Journal of medical genetics 2014) 3 60

Products for SCARNA18 Gene

Sources for SCARNA18 Gene

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