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Aliases for SCARNA18 Gene

Subcategory (RNA class) for SCARNA18 Gene


Quality Score for this RNA gene is


Aliases for SCARNA18 Gene

  • Small Cajal Body-Specific RNA 18 2 3
  • U109 3

External Ids for SCARNA18 Gene

ORGUL Members for SCARNA18 Gene

Previous GeneCards Identifiers for SCARNA18 Gene

  • GC05U900664
  • GC05M082395
  • GC05M077568

Summaries for SCARNA18 Gene

Entrez Gene Summary for SCARNA18 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SCARNA18, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]

GeneCards Summary for SCARNA18 Gene

SCARNA18 (Small Cajal Body-Specific RNA 18) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA18 Gene

Genomics for SCARNA18 Gene

Regulatory Elements for SCARNA18 Gene

Genomic Location for SCARNA18 Gene

83,064,204 bp from pter
83,064,337 bp from pter
134 bases
Minus strand

Genomic View for SCARNA18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA18 Gene

Proteins for SCARNA18 Gene

Post-translational modifications for SCARNA18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA18 Gene

Domains for SCARNA18 Gene

Gene Families for SCARNA18 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA18 Gene

Function for SCARNA18 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA18 Gene

Localization for SCARNA18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA18 Gene

Pathways for SCARNA18 Gene

SuperPathways for SCARNA18 Gene

No Data Available

Interacting Proteins for SCARNA18 Gene

Gene Ontology (GO) - Biological Process for SCARNA18 Gene


No data available for Pathways by source for SCARNA18 Gene

Transcripts for SCARNA18 Gene

mRNA/cDNA for SCARNA18 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA18 Gene

No ASD Table

Relevant External Links for SCARNA18 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA18 Gene

mRNA expression in normal human tissues for SCARNA18 Gene

SOURCE GeneReport for Unigene cluster for SCARNA18 Gene Hs.693283

genes like me logo Genes that share expressions with SCARNA18: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SCARNA18 Gene

Orthologs for SCARNA18 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA18 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoU109 36
  • 99 (a)
(Gallus gallus)
Aves snoU109 36
  • 73 (a)
(Anolis carolinensis)
Reptilia snoU109 36
  • 69 (a)
(Danio rerio)
Actinopterygii snoU109 36
  • 55 (a)
snoU109 36
  • 52 (a)
Species with no ortholog for SCARNA18:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA18 Gene

Gene Tree for SCARNA18 (if available)
Gene Tree for SCARNA18 (if available)

Paralogs for SCARNA18 Gene

No data available for Paralogs for SCARNA18 Gene

Variants for SCARNA18 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA18 Gene

Variant ID Type Subtype PubMed ID
nsv882242 CNV Loss 21882294

Relevant External Links for SCARNA18 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA18 Gene

Disorders for SCARNA18 Gene

No disorders were found for SCARNA18 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SCARNA18 Gene

Publications for SCARNA18 Gene

  1. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu A.D. … Qu L.H. (Nucleic Acids Res. 2005) 2 3

Products for SCARNA18 Gene

Sources for SCARNA18 Gene

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