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Aliases for SCARNA17 Gene

Subcategory (RNA class) for SCARNA17 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA17 Gene

  • Small Cajal Body-Specific RNA 17 2 3
  • MgU12-22/U4-8 3
  • U91 3

External Ids for SCARNA17 Gene

ORGUL Members for SCARNA17 Gene

Summaries for SCARNA17 Gene

GeneCards Summary for SCARNA17 Gene

SCARNA17 (Small Cajal Body-Specific RNA 17) is a RNA Gene, and belongs to scaRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA17 Gene

Genomics for SCARNA17 Gene

Genomic Location for SCARNA17 Gene

Start:
49,814,023 bp from pter
End:
49,814,443 bp from pter
Size:
421 bases
Orientation:
Plus strand

Genomic View for SCARNA17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA17 Gene

Regulatory Elements for SCARNA17 Gene

Proteins for SCARNA17 Gene

Post-translational modifications for SCARNA17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA17 Gene

Domains for SCARNA17 Gene

Gene Families for SCARNA17 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SCARNA17: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SCARNA17 Gene

Function for SCARNA17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA17 Gene

Localization for SCARNA17 Gene

No data available for Gene Ontology (GO) - Cellular Components for SCARNA17 Gene

Pathways for SCARNA17 Gene

SuperPathways for SCARNA17 Gene

No Data Available

Interacting Proteins for SCARNA17 Gene

Gene Ontology (GO) - Biological Process for SCARNA17 Gene

None

No data available for Pathways by source for SCARNA17 Gene

Transcripts for SCARNA17 Gene

mRNA/cDNA for SCARNA17 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA17 Gene

No ASD Table

Relevant External Links for SCARNA17 Gene

GeneLoc Exon Structure for
SCARNA17
ECgene alternative splicing isoforms for
SCARNA17

Expression for SCARNA17 Gene

mRNA expression in normal human tissues for SCARNA17 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA17 Gene

This gene is overexpressed in Whole Blood (4.3).
genes like me logo Genes that share expressions with SCARNA17: view

Orthologs for SCARNA17 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SCARNA17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA17 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA17 37
  • 87 (a)
ManyToMany
SCARNA17 37
  • 87 (a)
ManyToMany
SCARNA17 37
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SCARNA17 37
  • 77 (a)
ManyToMany
SCARNA17 37
  • 74 (a)
ManyToMany
SCARNA17 37
  • 77 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25913 37
  • 70 (a)
ManyToMany
Scarna17 16
oppossum
(Monodelphis domestica)
Mammalia SCARNA17 37
  • 60 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA17 37
  • 59 (a)
OneToMany
Species with no ortholog for SCARNA17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA17 Gene

ENSEMBL:
Gene Tree for SCARNA17 (if available)
TreeFam:
Gene Tree for SCARNA17 (if available)

Paralogs for SCARNA17 Gene

No data available for Paralogs for SCARNA17 Gene

Variants for SCARNA17 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA17 Gene

Variant ID Type Subtype PubMed ID
nsv516056 CNV Gain 19592680

Relevant External Links for SCARNA17 Gene

HapMap Linkage Disequilibrium report
SCARNA17

No data available for Sequence variations from dbSNP and Humsavar for SCARNA17 Gene

Disorders for SCARNA17 Gene

No disorders were found for SCARNA17 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA17 Gene

Publications for SCARNA17 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski K.T. … Steitz J.A. (Curr. Biol. 2004) 2 3
  2. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3

Products for SCARNA17 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA17
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA17
    • Block miRNA regulation of SCARNA17 using miScript Target Protectors

    Sources for SCARNA17 Gene

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