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Aliases for SCARNA16 Gene

Subcategory (RNA class) for SCARNA16 Gene


Quality Score for this RNA gene is


Aliases for SCARNA16 Gene

  • Small Cajal Body-Specific RNA 16 2 3 5
  • ACA47 ScaRNA 3
  • ACA47 3

External Ids for SCARNA16 Gene

Previous GeneCards Identifiers for SCARNA16 Gene

  • GC17P072601
  • GC17P072602
  • GC17P072605
  • GC17P075085
  • GC17P077090
  • GC17P077091
  • GC17P077092
  • GC17P077094

Summaries for SCARNA16 Gene

GeneCards Summary for SCARNA16 Gene

SCARNA16 (Small Cajal Body-Specific RNA 16) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA16 Gene

Genomics for SCARNA16 Gene

Regulatory Elements for SCARNA16 Gene

Enhancers for SCARNA16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCARNA16 on UCSC Golden Path with GeneCards custom track

Promoters for SCARNA16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001538311 -207 1401 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9

Genomic Location for SCARNA16 Gene

77,089,307 bp from pter
77,089,493 bp from pter
187 bases
Plus strand

Genomic View for SCARNA16 Gene

Genes around SCARNA16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA16 Gene

Proteins for SCARNA16 Gene

Post-translational modifications for SCARNA16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA16 Gene

Domains & Families for SCARNA16 Gene

Gene Families for SCARNA16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA16 Gene

Function for SCARNA16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA16 Gene

Localization for SCARNA16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA16 Gene

Pathways & Interactions for SCARNA16 Gene

SuperPathways for SCARNA16 Gene

No Data Available

Interacting Proteins for SCARNA16 Gene

Gene Ontology (GO) - Biological Process for SCARNA16 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA16 Gene

Transcripts for SCARNA16 Gene

mRNA/cDNA for SCARNA16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA16 Gene

No ASD Table

Relevant External Links for SCARNA16 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCARNA16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA16 Gene:

genes like me logo Genes that share expression patterns with SCARNA16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA16 Gene

Orthologs for SCARNA16 Gene

Evolution for SCARNA16 Gene

Gene Tree for SCARNA16 (if available)
Gene Tree for SCARNA16 (if available)

No data available for Orthologs for SCARNA16 Gene

Paralogs for SCARNA16 Gene

No data available for Paralogs for SCARNA16 Gene

Variants for SCARNA16 Gene

Sequence variations from dbSNP and Humsavar for SCARNA16 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111389689 -- 77,087,506(+) CCTCC(A/G)CCTCC upstream-variant-2KB
rs111457444 -- 77,087,386(+) CAGGC(C/T)GGTCT upstream-variant-2KB
rs11658606 -- 77,087,321(+) catgc(A/C)ccacc upstream-variant-2KB
rs11868249 -- 77,089,240(+) ATGAG(A/G)GCATT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs140502618 -- 77,088,694(+) GGAGA(C/T)ACGTG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SCARNA16 Gene

Variant ID Type Subtype PubMed ID
dgv5784n54 CNV gain 21841781
esv3582914 CNV loss 25503493
esv3641304 CNV gain 21293372

Relevant External Links for SCARNA16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA16 Gene

Disorders for SCARNA16 Gene

Relevant External Links for SCARNA16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SCARNA16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA16 Gene

Publications for SCARNA16 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64

Products for SCARNA16 Gene

Sources for SCARNA16 Gene

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