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Aliases for SCARNA15 Gene

Subcategory (RNA class) for SCARNA15 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCARNA15 Gene

  • Small Cajal Body-Specific RNA 15 2 3 5
  • ACA45 ScaRNA 3
  • ACA45 3

External Ids for SCARNA15 Gene

Previous GeneCards Identifiers for SCARNA15 Gene

  • GC15P081224
  • GC15P083425
  • GC15P082760
  • GC15P082767
  • GC15P082775
  • GC15P082784

Summaries for SCARNA15 Gene

GeneCards Summary for SCARNA15 Gene

SCARNA15 (Small Cajal Body-Specific RNA 15) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA15 Gene

Genomics for SCARNA15 Gene

Regulatory Elements for SCARNA15 Gene

Enhancers for SCARNA15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F082803 1.7 FANTOM5 Ensembl ENCODE 11.3 +55.7 55728 9.8 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 WHAMM AP3B2 FAM103A1 CPEB1-AS1 CPEB1 SCARNA15 EFL1 HDGFRP3 GOLGA6L9 C15orf40
GH15F082553 0.4 ENCODE 11.3 -198.8 -198839 0.2 GATA3 DPF2 SCARNA15 AP3B2 ENSG00000260836 ENSG00000278013
GH15F082749 1.1 ENCODE 0.8 -2.0 -2049 3.3 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 AP3B2 FSD2 EFL1 HOMER2 C15orf40 HDGFRP3 GOLGA6L10 SNHG21 SCARNA15
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA15 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA15 Gene

Chromosome:
15
Start:
82,752,884 bp from pter
End:
82,757,208 bp from pter
Size:
4,325 bases
Orientation:
Plus strand

Genomic View for SCARNA15 Gene

Genes around SCARNA15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA15 Gene

Proteins for SCARNA15 Gene

Post-translational modifications for SCARNA15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA15 Gene

Domains & Families for SCARNA15 Gene

Gene Families for SCARNA15 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA15 Gene

Function for SCARNA15 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA15 Gene

Localization for SCARNA15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA15 Gene

Pathways & Interactions for SCARNA15 Gene

SuperPathways for SCARNA15 Gene

No Data Available

Interacting Proteins for SCARNA15 Gene

Gene Ontology (GO) - Biological Process for SCARNA15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA15 Gene

Transcripts for SCARNA15 Gene

mRNA/cDNA for SCARNA15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA15 Gene

No ASD Table

Relevant External Links for SCARNA15 Gene

GeneLoc Exon Structure for
SCARNA15
ECgene alternative splicing isoforms for
SCARNA15

Expression for SCARNA15 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA15 Gene:

SCARNA15

SOURCE GeneReport for Unigene cluster for SCARNA15 Gene:

Hs.743895
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA15 Gene

Orthologs for SCARNA15 Gene

Evolution for SCARNA15 Gene

ENSEMBL:
Gene Tree for SCARNA15 (if available)
TreeFam:
Gene Tree for SCARNA15 (if available)

No data available for Orthologs for SCARNA15 Gene

Paralogs for SCARNA15 Gene

No data available for Paralogs for SCARNA15 Gene

Variants for SCARNA15 Gene

Sequence variations from dbSNP and Humsavar for SCARNA15 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs11631033 -- 82,755,133(+) GATGT(A/G)TATAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs12915384 -- 82,756,562(+) AATTT(G/T)ATCAG intron-variant, downstream-variant-500B, utr-variant-3-prime
rs138007198 -- 82,756,281(+) AAGAC(C/T)AATGT intron-variant, downstream-variant-500B, utr-variant-3-prime
rs138998098 -- 82,755,609(+) ACAAG(C/T)AGTAA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs139684272 -- 82,754,478(+) TTACA(G/T)GTGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA15 Gene

Variant ID Type Subtype PubMed ID
nsv817702 CNV loss 17921354
nsv471687 CNV gain 15918152
nsv469557 CNV loss 16826518
nsv1120052 OTHER inversion 24896259
esv34318 CNV loss 17911159
esv2674021 CNV deletion 23128226
dgv2637n100 CNV gain 25217958

Relevant External Links for SCARNA15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA15 Gene

Disorders for SCARNA15 Gene

Relevant External Links for SCARNA15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA15

No disorders were found for SCARNA15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA15 Gene

Publications for SCARNA15 Gene

  1. A human snoRNA with microRNA-like functions. (PMID: 19026782) Ender C. … Meister G. (Mol. Cell 2008) 3 64

Products for SCARNA15 Gene

Sources for SCARNA15 Gene

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