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Aliases for SCARNA15 Gene

Subcategory (RNA class) for SCARNA15 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA15 Gene

  • Small Cajal Body-Specific RNA 15 2 3
  • ACA45 3 6
  • ACA45 ScaRNA 3

External Ids for SCARNA15 Gene

Previous GeneCards Identifiers for SCARNA15 Gene

  • GC15P081224
  • GC15P083425

Summaries for SCARNA15 Gene

GeneCards Summary for SCARNA15 Gene

SCARNA15 (Small Cajal Body-Specific RNA 15) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SCARNA15 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SCARNA15 Gene

Genomics for SCARNA15 Gene

Regulatory Elements for SCARNA15 Gene

Genomic Location for SCARNA15 Gene

Start:
82,752,884 bp from pter
End:
82,757,208 bp from pter
Size:
4,325 bases
Orientation:
Plus strand

Genomic View for SCARNA15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA15 Gene

Proteins for SCARNA15 Gene

Post-translational modifications for SCARNA15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA15 Gene

Domains for SCARNA15 Gene

Gene Families for SCARNA15 Gene

HGNC:
  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA15 Gene

Function for SCARNA15 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA15 Gene

Localization for SCARNA15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA15 Gene

Pathways for SCARNA15 Gene

SuperPathways for SCARNA15 Gene

No Data Available

Interacting Proteins for SCARNA15 Gene

Gene Ontology (GO) - Biological Process for SCARNA15 Gene

None

No data available for Pathways by source for SCARNA15 Gene

Transcripts for SCARNA15 Gene

mRNA/cDNA for SCARNA15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA15 Gene

No ASD Table

Relevant External Links for SCARNA15 Gene

GeneLoc Exon Structure for
SCARNA15
ECgene alternative splicing isoforms for
SCARNA15

Expression for SCARNA15 Gene

SOURCE GeneReport for Unigene cluster for SCARNA15 Gene Hs.743895

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA15 Gene

Orthologs for SCARNA15 Gene

Evolution for SCARNA15 Gene

ENSEMBL:
Gene Tree for SCARNA15 (if available)
TreeFam:
Gene Tree for SCARNA15 (if available)

No data available for Orthologs for SCARNA15 Gene

Paralogs for SCARNA15 Gene

No data available for Paralogs for SCARNA15 Gene

Variants for SCARNA15 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA15 Gene

Variant ID Type Subtype PubMed ID
esv34318 CNV Loss 17911159
esv2674021 CNV Deletion 23128226
nsv817702 CNV Loss 17921354
nsv469557 CNV Complex 16826518
nsv471687 CNV Gain 15918152

Relevant External Links for SCARNA15 Gene

HapMap Linkage Disequilibrium report
SCARNA15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA15 Gene

Disorders for SCARNA15 Gene

No disorders were found for SCARNA15 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA15 Gene

Publications for SCARNA15 Gene

  1. A human snoRNA with microRNA-like functions. (PMID: 19026782) Ender C. … Meister G. (Mol. Cell 2008) 3

Products for SCARNA15 Gene

Sources for SCARNA15 Gene

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