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Aliases for SCARNA15 Gene

Subcategory (RNA class) for SCARNA15 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCARNA15 Gene

  • Small Cajal Body-Specific RNA 15 2 3 5
  • ACA45 ScaRNA 3
  • ACA45 3

External Ids for SCARNA15 Gene

Previous GeneCards Identifiers for SCARNA15 Gene

  • GC15P081224
  • GC15P083425
  • GC15P082760
  • GC15P082767
  • GC15P082775
  • GC15P082784
  • GC15P082788
  • GC15P082789
  • GC15P082790

Summaries for SCARNA15 Gene

GeneCards Summary for SCARNA15 Gene

SCARNA15 (Small Cajal Body-Specific RNA 15) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SCARNA15 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA15 Gene

Genomics for SCARNA15 Gene

GeneHancer (GH) Regulatory Elements for SCARNA15 Gene

Promoters and enhancers for SCARNA15 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I082803 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +52.7 52667 9.8 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 WHAMM FSD2 AP3B2 FAM103A1 SCARNA15 EFL1 GOLGA6L9 C15orf40 GC15M082841
GH15I082553 Enhancer 0.4 ENCODE 11.3 -201.9 -201899 0.2 GATA3 GATAD2B DPF2 ENSG00000260836 SCARNA15 AP3B2 ENSG00000278013 CPEB1
GH15I082763 Enhancer 0.8 ENCODE 0.4 +7.9 7892 1.3 DRAP1 ELF3 SOX13 FOXA2 SAP130 MLX ARID4B DMAP1 ZNF644 RAD21 WHAMM HDGFL3 SCARNA15 GC15P082732 FSD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCARNA15 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SCARNA15 gene promoter:

Genomic Locations for SCARNA15 Gene

Genomic Locations for SCARNA15 Gene
chr15:82,755,945-82,756,071
(GRCh38/hg38)
Size:
127 bases
Orientation:
Plus strand
chr15:83,421,636-83,425,960
(GRCh37/hg19)

Genomic View for SCARNA15 Gene

Genes around SCARNA15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA15 Gene

Proteins for SCARNA15 Gene

Post-translational modifications for SCARNA15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA15 Gene

Domains & Families for SCARNA15 Gene

Gene Families for SCARNA15 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA15: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA15 Gene

Function for SCARNA15 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA15 Gene

Localization for SCARNA15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCARNA15 Gene

Pathways & Interactions for SCARNA15 Gene

SuperPathways for SCARNA15 Gene

No Data Available

Interacting Proteins for SCARNA15 Gene

Gene Ontology (GO) - Biological Process for SCARNA15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA15 Gene

Drugs & Compounds for SCARNA15 Gene

No Compound Related Data Available

Transcripts for SCARNA15 Gene

mRNA/cDNA for SCARNA15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA15 Gene

No ASD Table

Relevant External Links for SCARNA15 Gene

GeneLoc Exon Structure for
SCARNA15
ECgene alternative splicing isoforms for
SCARNA15

Expression for SCARNA15 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA15 Gene:

SCARNA15

SOURCE GeneReport for Unigene cluster for SCARNA15 Gene:

Hs.743895
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA15 Gene

Orthologs for SCARNA15 Gene

Evolution for SCARNA15 Gene

ENSEMBL:
Gene Tree for SCARNA15 (if available)
TreeFam:
Gene Tree for SCARNA15 (if available)

No data available for Orthologs for SCARNA15 Gene

Paralogs for SCARNA15 Gene

No data available for Paralogs for SCARNA15 Gene

Variants for SCARNA15 Gene

Sequence variations from dbSNP and Humsavar for SCARNA15 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000569515 -- 82,754,458(+) C/T upstream_transcript_variant
rs1001150361 -- 82,754,205(+) TTTGTTTT/TTT upstream_transcript_variant
rs1003191218 -- 82,755,582(+) C/T upstream_transcript_variant
rs1003509616 -- 82,754,133(+) A/C/G upstream_transcript_variant
rs1005066548 -- 82,754,393(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SCARNA15 Gene

Variant ID Type Subtype PubMed ID
dgv2637n100 CNV gain 25217958
esv2674021 CNV deletion 23128226
esv34318 CNV loss 17911159
nsv1120052 OTHER inversion 24896259
nsv469557 CNV loss 16826518
nsv471687 CNV gain 15918152
nsv817702 CNV loss 17921354

Additional Variant Information for SCARNA15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA15 Gene

Disorders for SCARNA15 Gene

Additional Disease Information for SCARNA15

No disorders were found for SCARNA15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA15 Gene

Publications for SCARNA15 Gene

  1. A human snoRNA with microRNA-like functions. (PMID: 19026782) Ender C … Meister G (Molecular cell 2008) 3 58
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 3 58

Products for SCARNA15 Gene

Sources for SCARNA15 Gene

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