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SCARNA14 Gene(RNA Gene)

Small Cajal Body-Specific RNA 14

GCID:
GC15M066347
GIFtS:
18
Genes Participants
UDN Logo

Aliases for SCARNA14 Gene

Subcategory (RNA class) for SCARNA14 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA14 Gene

  • Small Cajal Body-Specific RNA 14 2 3 5
  • U100 3

External Ids for SCARNA14 Gene

ORGUL Members for SCARNA14 Gene

Previous GeneCards Identifiers for SCARNA14 Gene

  • GC15U900549
  • GC15M064429
  • GC15M066639
  • GC15M043475

Summaries for SCARNA14 Gene

GeneCards Summary for SCARNA14 Gene

SCARNA14 (Small Cajal Body-Specific RNA 14) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA14 Gene

Genomics for SCARNA14 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SCARNA14 Gene


Transcription factor binding sites by QIAGEN in the SCARNA14 gene promoter:

Genomic Location for SCARNA14 Gene

Chromosome:
15
Start:
66,347,206 bp from pter
End:
66,347,342 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for SCARNA14 Gene

Genes around SCARNA14 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA14 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA14 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SCARNA14 Gene

Proteins for SCARNA14 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SCARNA14 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA14 Gene

Domains & Families for SCARNA14 Gene

Gene Families for SCARNA14 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA14: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA14 Gene

Function for SCARNA14 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA14 Gene

Localization for SCARNA14 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCARNA14 gene
Compartment Confidence
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SCARNA14 Gene

Pathways & Interactions for SCARNA14 Gene

SuperPathways for SCARNA14 Gene

PathCards logo More details on SuperPathways for SCARNA14
No Data Available

Interacting Proteins for SCARNA14 Gene

Gene Ontology (GO) - Biological Process for SCARNA14 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA14 Gene

Drugs & Compounds for SCARNA14 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SCARNA14 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SCARNA14 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA14 Gene

No ASD Table

Relevant External Links for SCARNA14 Gene

GeneLoc Exon Structure for
SCARNA14
ECgene alternative splicing isoforms for
SCARNA14

Expression for SCARNA14 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA14 Gene

mRNA expression in normal human tissues for SCARNA14 Gene
mRNA expression by GTEx for SCARNA14 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA14 Gene:

SCARNA14
genes like me logo Genes that share expression patterns with SCARNA14: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA14 Gene

Orthologs for SCARNA14 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA14 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SCARNA14 35
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SCARNA14 35
  • 97 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SCARNA14 35
  • 96 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm24289 35
  • 94 (a)
 OneToMany
Gm23505 35
  • 83 (a)
 OneToMany
Gm22433 35
  • 80 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia SCARNA14 35
  • 82 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SCARNA14 35
  • 81 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SCARNA14 35
  • 76 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SCARNA14 35
  • 73 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SCARNA14 35 35 35
  • 63 (a)
 OneToMany
Species where no ortholog for SCARNA14 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA14 Gene

ENSEMBL:
Gene Tree for SCARNA14 (if available)
TreeFam:
Gene Tree for SCARNA14 (if available)

Paralogs for SCARNA14 Gene

No data available for Paralogs for SCARNA14 Gene

Variants for SCARNA14 Gene

Sequence variations from dbSNP and Humsavar for SCARNA14 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000185322 -- 66,347,561(+) TTTGA(C/T)ATACA intron-variant, upstream-variant-2KB
rs1000973466 -- 66,348,210(+) TCGGT(C/T)GCCCG intron-variant, upstream-variant-2KB
rs1002381611 -- 66,349,228(+) AAAAT(A/G)AACAC intron-variant, upstream-variant-2KB
rs1006438957 -- 66,346,935(+) TACAG(C/G)TGCCC intron-variant, downstream-variant-500B
rs1006491253 -- 66,347,106(+) ACATT(A/C)CTTTA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SCARNA14 Gene

Variant ID Type Subtype PubMed ID
nsv1047588 CNV loss 25217958
nsv833045 CNV gain 17160897

Relevant External Links for SCARNA14 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA14

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA14 Gene

Disorders for SCARNA14 Gene

Relevant External Links for SCARNA14

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA14

No disorders were found for SCARNA14 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA14 Gene

Publications for SCARNA14 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P. … CavaillAc J. (Nucleic Acids Res. 2003) 2 3 64
  2. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 3 64

Products for SCARNA14 Gene

Sources for SCARNA14 Gene

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