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Aliases for SCARNA13 Gene

Subcategory (RNA class) for SCARNA13 Gene


Quality Score for this RNA gene is


Aliases for SCARNA13 Gene

  • Small Cajal Body-Specific RNA 13 2 3
  • U93 3

External Ids for SCARNA13 Gene

ORGUL Members for SCARNA13 Gene

Previous GeneCards Identifiers for SCARNA13 Gene

  • GC14U900662
  • GC14M095071
  • GC14M095999
  • GC14M076185

Summaries for SCARNA13 Gene

GeneCards Summary for SCARNA13 Gene

SCARNA13 (Small Cajal Body-Specific RNA 13) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA13 Gene

Genomics for SCARNA13 Gene

Regulatory Elements for SCARNA13 Gene

Genomic Location for SCARNA13 Gene

95,533,355 bp from pter
95,533,629 bp from pter
275 bases
Minus strand

Genomic View for SCARNA13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA13 Gene

Proteins for SCARNA13 Gene

Post-translational modifications for SCARNA13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA13 Gene

Domains & Families for SCARNA13 Gene

Gene Families for SCARNA13 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA13 Gene

Function for SCARNA13 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA13 Gene

Localization for SCARNA13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA13 Gene

Pathways & Interactions for SCARNA13 Gene

SuperPathways for SCARNA13 Gene

No Data Available

Interacting Proteins for SCARNA13 Gene

Gene Ontology (GO) - Biological Process for SCARNA13 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCARNA13 Gene

Drugs & Compounds for SCARNA13 Gene

No Compound Related Data Available

Transcripts for SCARNA13 Gene

mRNA/cDNA for SCARNA13 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA13 Gene

No ASD Table

Relevant External Links for SCARNA13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA13 Gene

mRNA expression in normal human tissues for SCARNA13 Gene

genes like me logo Genes that share expression patterns with SCARNA13: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA13 Gene

Orthologs for SCARNA13 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA13 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Scarna13 16
Gm25624 36
  • 79 (a)
Gm26489 36
  • 78 (a)
Scarna13 36
  • 86 (a)
(Bos Taurus)
Mammalia SCARNA13 36
  • 83 (a)
(Canis familiaris)
Mammalia SCARNA13 36
  • 80 (a)
(Monodelphis domestica)
Mammalia SCARNA13 36
  • 77 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA13 36
  • 72 (a)
(Pan troglodytes)
Mammalia SCARNA13 36
  • 99 (a)
(Gallus gallus)
Aves SCARNA13 36
  • 74 (a)
(Anolis carolinensis)
Reptilia SCARNA13 36
  • 68 (a)
(Danio rerio)
Actinopterygii SCARNA13 36
  • 56 (a)
Species with no ortholog for SCARNA13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA13 Gene

Gene Tree for SCARNA13 (if available)
Gene Tree for SCARNA13 (if available)

Paralogs for SCARNA13 Gene

No data available for Paralogs for SCARNA13 Gene

Variants for SCARNA13 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA13 Gene

Variant ID Type Subtype PubMed ID
dgv89e55 CNV Gain 17911159

Relevant External Links for SCARNA13 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SCARNA13 Gene

Disorders for SCARNA13 Gene

Relevant External Links for SCARNA13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SCARNA13: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA13 Gene

Publications for SCARNA13 Gene

  1. A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains. (PMID: 12409454) Kiss A.M. … Kiss T. (Nucleic Acids Res. 2002) 2 67
  2. hNaf1 is required for accumulation of human box H/ACA snoRNPs, scaRNPs, and telomerase. (PMID: 16601202) Hoareau-Aveilla C. … Henry Y. (RNA 2006) 67

Products for SCARNA13 Gene

Sources for SCARNA13 Gene

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