Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SCARNA11 Gene

Subcategory (RNA class) for SCARNA11 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA11 Gene

  • Small Cajal Body-Specific RNA 11 2 3 5
  • ACA57 ScaRNA 3
  • ACA57 3

External Ids for SCARNA11 Gene

Previous GeneCards Identifiers for SCARNA11 Gene

  • GC12M006561
  • GC12M006690
  • GC12M006544

Summaries for SCARNA11 Gene

GeneCards Summary for SCARNA11 Gene

SCARNA11 (Small Cajal Body-Specific RNA 11) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA11 Gene

Genomics for SCARNA11 Gene

Regulatory Elements for SCARNA11 Gene

Enhancers for SCARNA11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F006602 1.5 FANTOM5 ENCODE 12.2 -24.1 -24119 7.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 ZNF548 ENSG00000219410 NOP2 ENSG00000247853 C12orf57 PHB2 ACRBP LOC100419825 LOC100420983 ZNF384 LPAR5
GH12F006546 1.5 FANTOM5 ENCODE 12 +29.7 29694 10.3 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ENSG00000219410 ENSG00000247853 NCAPD2 TAPBPL PHB2 NOP2 SCARNA12 VAMP1 SPSB2 SCARNA11
GH12F006344 1.4 FANTOM5 ENCODE 10.6 +235.0 234954 3.5 PKNOX1 ATF1 ARNT SIN3A BRCA1 GATA2 FOS DEK JUNB NCOA1 CHD4 LTBR SCNN1A VAMP1 ENSG00000247853 SCARNA11 ACRBP IFFO1 NOP2 ENSG00000219410
GH12F006351 0.8 Ensembl 10.6 +228.9 228909 2.6 HDGF PKNOX1 BMI1 ZIC2 ZBTB40 POLR2A EED ZNF143 ZNF207 ETV6 LTBR SCNN1A VAMP1 SCARNA11 ENSG00000247853 CHD4 CD27-AS1 TAPBPL IFFO1 NOP2
GH12F006416 0.8 FANTOM5 Ensembl 10.3 +164.7 164665 1.1 IKZF1 REST MYC SPI1 CHD4 VAMP1 SCNN1A LTBR CD27 CD27-AS1 TAPBPL ENSG00000255966 GAPDH NCAPD2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA11 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA11 Gene

Chromosome:
12
Start:
6,581,473 bp from pter
End:
6,581,609 bp from pter
Size:
137 bases
Orientation:
Minus strand

Genomic View for SCARNA11 Gene

Genes around SCARNA11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA11 Gene

Proteins for SCARNA11 Gene

Post-translational modifications for SCARNA11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA11 Gene

Domains & Families for SCARNA11 Gene

Gene Families for SCARNA11 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA11 Gene

Function for SCARNA11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA11 Gene

Localization for SCARNA11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA11 Gene

Pathways & Interactions for SCARNA11 Gene

SuperPathways for SCARNA11 Gene

No Data Available

Interacting Proteins for SCARNA11 Gene

Gene Ontology (GO) - Biological Process for SCARNA11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA11 Gene

Transcripts for SCARNA11 Gene

mRNA/cDNA for SCARNA11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA11 Gene

No ASD Table

Relevant External Links for SCARNA11 Gene

GeneLoc Exon Structure for
SCARNA11
ECgene alternative splicing isoforms for
SCARNA11

Expression for SCARNA11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCARNA11 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA11 Gene:

SCARNA11

SOURCE GeneReport for Unigene cluster for SCARNA11 Gene:

Hs.689692
genes like me logo Genes that share expression patterns with SCARNA11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA11 Gene

Orthologs for SCARNA11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA11 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA11 35
  • 89 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA11 35
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA11 35
  • 59 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SCARNA11 35
  • 56 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SCARNA11 35
  • 63 (a)
OneToMany
Species where no ortholog for SCARNA11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA11 Gene

ENSEMBL:
Gene Tree for SCARNA11 (if available)
TreeFam:
Gene Tree for SCARNA11 (if available)

Paralogs for SCARNA11 Gene

No data available for Paralogs for SCARNA11 Gene

Variants for SCARNA11 Gene

Sequence variations from dbSNP and Humsavar for SCARNA11 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs201992075 Pathogenic 6,581,131(+) AACAA(C/T)GACCT downstream-variant-500B, reference, missense
rs10437832 -- 6,581,984(+) tttta(A/G)tagag intron-variant, upstream-variant-2KB
rs111683971 -- 6,582,050(+) CACCC(A/G)CCTCA intron-variant, upstream-variant-2KB
rs112128909 -- 6,582,974(+) GGTAG(A/C/G/T)ATATT intron-variant, upstream-variant-2KB
rs114435287 -- 6,582,318(+) GGGAT(C/T)ATGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA11 Gene

Variant ID Type Subtype PubMed ID
nsv973982 CNV duplication 23825009
nsv832322 CNV loss 17160897
nsv826211 CNV gain 20364138
nsv826210 CNV gain 20364138
nsv509452 CNV insertion 20534489

Relevant External Links for SCARNA11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA11 Gene

Disorders for SCARNA11 Gene

Relevant External Links for SCARNA11

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA11

No disorders were found for SCARNA11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA11 Gene

Publications for SCARNA11 Gene

No publications were found for SCARNA11 Gene.

Products for SCARNA11 Gene

Sources for SCARNA11 Gene

Content
Loading form....