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Aliases for SCARNA11 Gene

Subcategory (RNA class) for SCARNA11 Gene


Quality Score for this RNA gene is


Aliases for SCARNA11 Gene

  • Small Cajal Body-Specific RNA 11 2 3
  • ACA57 ScaRNA 3
  • ACA57 3

External Ids for SCARNA11 Gene

Previous GeneCards Identifiers for SCARNA11 Gene

  • GC12M006561
  • GC12M006690
  • GC12M006544

Summaries for SCARNA11 Gene

GeneCards Summary for SCARNA11 Gene

SCARNA11 (Small Cajal Body-Specific RNA 11) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA11 Gene

Genomics for SCARNA11 Gene

Regulatory Elements for SCARNA11 Gene

Genomic Location for SCARNA11 Gene

6,581,473 bp from pter
6,581,609 bp from pter
137 bases
Minus strand

Genomic View for SCARNA11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA11 Gene

Proteins for SCARNA11 Gene

Post-translational modifications for SCARNA11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA11 Gene

Domains for SCARNA11 Gene

Gene Families for SCARNA11 Gene

  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA11 Gene

Function for SCARNA11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA11 Gene

Localization for SCARNA11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA11 Gene

Pathways for SCARNA11 Gene

SuperPathways for SCARNA11 Gene

No Data Available

Interacting Proteins for SCARNA11 Gene

Gene Ontology (GO) - Biological Process for SCARNA11 Gene


No data available for Pathways by source for SCARNA11 Gene

Transcripts for SCARNA11 Gene

mRNA/cDNA for SCARNA11 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA11

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA11 Gene

No ASD Table

Relevant External Links for SCARNA11 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCARNA11 Gene

mRNA expression in normal human tissues for SCARNA11 Gene

SOURCE GeneReport for Unigene cluster for SCARNA11 Gene Hs.689692

genes like me logo Genes that share expressions with SCARNA11: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SCARNA11 Gene

Orthologs for SCARNA11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA11 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SCARNA11 36
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia SCARNA11 36
  • 69 (a)
(Pan troglodytes)
Mammalia SCARNA11 36
  • 100 (a)
(Gallus gallus)
Aves SCARNA11 36
  • 59 (a)
(Anolis carolinensis)
Reptilia SCARNA11 36
  • 56 (a)
(Danio rerio)
Actinopterygii SCARNA11 36
  • 63 (a)
Species with no ortholog for SCARNA11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA11 Gene

Gene Tree for SCARNA11 (if available)
Gene Tree for SCARNA11 (if available)

Paralogs for SCARNA11 Gene

No data available for Paralogs for SCARNA11 Gene

Variants for SCARNA11 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA11 Gene

Variant ID Type Subtype PubMed ID
nsv826210 CNV Gain 20364138
nsv509452 CNV Insertion 20534489
nsv832322 CNV Loss 17160897
nsv826211 CNV Gain 20364138

Relevant External Links for SCARNA11 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA11 Gene

Disorders for SCARNA11 Gene

No disorders were found for SCARNA11 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SCARNA11 Gene

Publications for SCARNA11 Gene

No publications were found for SCARNA11 Gene.

Products for SCARNA11 Gene

Sources for SCARNA11 Gene

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