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Aliases for SCARNA10 Gene

Subcategory (RNA class) for SCARNA10 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA10 Gene

  • Small Cajal Body-Specific RNA 10 2 3 5
  • U85 3

External Ids for SCARNA10 Gene

ORGUL Members for SCARNA10 Gene

Previous GeneCards Identifiers for SCARNA10 Gene

  • GC12U900562
  • GC12P006620
  • GC12P006474
  • GC12P006622

Summaries for SCARNA10 Gene

GeneCards Summary for SCARNA10 Gene

SCARNA10 (Small Cajal Body-Specific RNA 10) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA10 Gene

Genomics for SCARNA10 Gene

Regulatory Elements for SCARNA10 Gene

Genomic Location for SCARNA10 Gene

Chromosome:
12
Start:
6,510,222 bp from pter
End:
6,510,551 bp from pter
Size:
330 bases
Orientation:
Plus strand

Genomic View for SCARNA10 Gene

Genes around SCARNA10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA10 Gene

Proteins for SCARNA10 Gene

Post-translational modifications for SCARNA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA10 Gene

Domains & Families for SCARNA10 Gene

Gene Families for SCARNA10 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA10 Gene

Function for SCARNA10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA10 Gene

Localization for SCARNA10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCARNA10 Gene COMPARTMENTS Subcellular localization image for SCARNA10 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SCARNA10 Gene

Pathways & Interactions for SCARNA10 Gene

SuperPathways for SCARNA10 Gene

No Data Available

Interacting Proteins for SCARNA10 Gene

Gene Ontology (GO) - Biological Process for SCARNA10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA10 Gene

Drugs & Compounds for SCARNA10 Gene

No Compound Related Data Available

Transcripts for SCARNA10 Gene

mRNA/cDNA for SCARNA10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA10 Gene

No ASD Table

Relevant External Links for SCARNA10 Gene

GeneLoc Exon Structure for
SCARNA10
ECgene alternative splicing isoforms for
SCARNA10

Expression for SCARNA10 Gene

mRNA expression in normal human tissues for SCARNA10 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA10 Gene

This gene is overexpressed in Whole Blood (x7.0).
genes like me logo Genes that share expression patterns with SCARNA10: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SCARNA10 Gene

Orthologs for SCARNA10 Gene

Evolution for SCARNA10 Gene

ENSEMBL:
Gene Tree for SCARNA10 (if available)
TreeFam:
Gene Tree for SCARNA10 (if available)

No data available for Orthologs for SCARNA10 Gene

Paralogs for SCARNA10 Gene

No data available for Paralogs for SCARNA10 Gene

Variants for SCARNA10 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA10 Gene

Variant ID Type Subtype PubMed ID
esv34325 CNV Gain 17911159
dgv453e1 CNV Complex 17122850
esv34390 CNV Gain 17911159
essv12131 CNV CNV 17122850
nsv8895 CNV Gain 18304495

Relevant External Links for SCARNA10 Gene

HapMap Linkage Disequilibrium report
SCARNA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SCARNA10 Gene

Disorders for SCARNA10 Gene

Relevant External Links for SCARNA10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA10

No disorders were found for SCARNA10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA10 Gene

Publications for SCARNA10 Gene

  1. A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. (PMID: 11157760) JA!dy B.E. … Kiss T. (EMBO J. 2001) 2 3 67

Products for SCARNA10 Gene

Sources for SCARNA10 Gene

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