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Aliases for SCARNA10 Gene

Subcategory (RNA class) for SCARNA10 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA10 Gene

  • Small Cajal Body-Specific RNA 10 2 3
  • U85 3

External Ids for SCARNA10 Gene

ORGUL Members for SCARNA10 Gene

Previous GeneCards Identifiers for SCARNA10 Gene

  • GC12U900562
  • GC12P006620
  • GC12P006474
  • GC12P006622

Summaries for SCARNA10 Gene

GeneCards Summary for SCARNA10 Gene

SCARNA10 (Small Cajal Body-Specific RNA 10) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA10 Gene

Genomics for SCARNA10 Gene

Regulatory Elements for SCARNA10 Gene

Genomic Location for SCARNA10 Gene

Start:
6,510,222 bp from pter
End:
6,510,551 bp from pter
Size:
330 bases
Orientation:
Plus strand

Genomic View for SCARNA10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA10 Gene

Proteins for SCARNA10 Gene

Post-translational modifications for SCARNA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA10 Gene

Domains for SCARNA10 Gene

Gene Families for SCARNA10 Gene

HGNC:
  • SCARNA :ncRNAs / Small nucleolar RNAs : Small cajal body-specific

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA10 Gene

Function for SCARNA10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA10 Gene

Localization for SCARNA10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA10 Gene

Pathways for SCARNA10 Gene

SuperPathways for SCARNA10 Gene

No Data Available

Interacting Proteins for SCARNA10 Gene

Gene Ontology (GO) - Biological Process for SCARNA10 Gene

None

No data available for Pathways by source for SCARNA10 Gene

Transcripts for SCARNA10 Gene

mRNA/cDNA for SCARNA10 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA10 Gene

No ASD Table

Relevant External Links for SCARNA10 Gene

GeneLoc Exon Structure for
SCARNA10
ECgene alternative splicing isoforms for
SCARNA10

Expression for SCARNA10 Gene

mRNA expression in normal human tissues for SCARNA10 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA10 Gene

This gene is overexpressed in Whole Blood (7.0).
genes like me logo Genes that share expressions with SCARNA10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA10 Gene

Orthologs for SCARNA10 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SCARNA10 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Scarna10 16
Species with no ortholog for SCARNA10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SCARNA10 Gene

ENSEMBL:
Gene Tree for SCARNA10 (if available)
TreeFam:
Gene Tree for SCARNA10 (if available)

Paralogs for SCARNA10 Gene

No data available for Paralogs for SCARNA10 Gene

Variants for SCARNA10 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA10 Gene

Variant ID Type Subtype PubMed ID
esv34325 CNV Gain 17911159
dgv453e1 CNV Complex 17122850
esv34390 CNV Gain 17911159
essv12131 CNV CNV 17122850
nsv8895 CNV Gain 18304495

Relevant External Links for SCARNA10 Gene

HapMap Linkage Disequilibrium report
SCARNA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA10 Gene

Disorders for SCARNA10 Gene

No disorders were found for SCARNA10 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA10 Gene

Publications for SCARNA10 Gene

  1. A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. (PMID: 11157760) JA!dy B.E. … Kiss T. (EMBO J. 2001) 2 3

Products for SCARNA10 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA10
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA10
    • Block miRNA regulation of SCARNA10 using miScript Target Protectors

    Sources for SCARNA10 Gene

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