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Aliases for SCARNA10 Gene

Subcategory (RNA class) for SCARNA10 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA10 Gene

  • Small Cajal Body-Specific RNA 10 2 3 5
  • U85 3

External Ids for SCARNA10 Gene

ORGUL Members for SCARNA10 Gene

Previous GeneCards Identifiers for SCARNA10 Gene

  • GC12U900562
  • GC12P006620
  • GC12P006474
  • GC12P006622

Summaries for SCARNA10 Gene

GeneCards Summary for SCARNA10 Gene

SCARNA10 (Small Cajal Body-Specific RNA 10) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA10 Gene

Genomics for SCARNA10 Gene

Regulatory Elements for SCARNA10 Gene

Enhancers for SCARNA10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G006546 1.8 FANTOM5 ENCODE dbSUPER 11.5 +41.7 41694 10.3 CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 ENSG00000219410 ENSG00000247853 NCAPD2 TAPBPL NOP2 SCARNA12 VAMP1 SPSB2 SCARNA11 CHD4
GH12G006442 1.6 Ensembl ENCODE dbSUPER 11.1 -64.7 -64727 6.0 HDGF PKNOX1 AGO1 WRNIP1 SIN3A ARID4B YBX1 YY1 ZNF143 ZNF548 CD27-AS1 NOP2 TAPBPL ENSG00000219410 ENSG00000247853 ENSG00000255966 GAPDH VAMP1 TNFRSF1A NCAPD2
GH12G006530 1.4 ENCODE dbSUPER 12.5 +26.9 26874 12.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 NCAPD2 ENSG00000219410 MRPL51 ENSG00000247853 SPSB2 TAPBPL VAMP1 NOP2 ENSG00000256967 ZNF384
GH12G006468 1.1 ENCODE 11.5 -40.0 -39978 3.1 HDGF HNRNPUL1 PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TAPBPL NCAPD2 ENSG00000219410 ENSG00000247853 MRPL51 VAMP1 SPSB2 SCARNA10 ENSG00000255966 GAPDH
GH12G006391 1.1 Ensembl ENCODE dbSUPER 11 -117.8 -117788 2.1 ZNF362 ZBTB40 ATF2 ZBTB49 ZNF121 ZNF791 POLR2A KDM5B SPI1 RBFOX2 LTBR ENSG00000219410 LOC105369628 TNFRSF1A CD27 NCAPD2 SCARNA10 C12orf57 VAMP1 PHB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCARNA10 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA10 Gene

Chromosome:
12
Start:
6,510,222 bp from pter
End:
6,510,551 bp from pter
Size:
330 bases
Orientation:
Plus strand

Genomic View for SCARNA10 Gene

Genes around SCARNA10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA10 Gene

Proteins for SCARNA10 Gene

Post-translational modifications for SCARNA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA10 Gene

Domains & Families for SCARNA10 Gene

Gene Families for SCARNA10 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA10 Gene

Function for SCARNA10 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA10 Gene

Localization for SCARNA10 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SCARNA10 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SCARNA10 Gene

Pathways & Interactions for SCARNA10 Gene

SuperPathways for SCARNA10 Gene

No Data Available

Interacting Proteins for SCARNA10 Gene

Gene Ontology (GO) - Biological Process for SCARNA10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA10 Gene

Drugs & Compounds for SCARNA10 Gene

No Compound Related Data Available

Transcripts for SCARNA10 Gene

mRNA/cDNA for SCARNA10 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA10 Gene

No ASD Table

Relevant External Links for SCARNA10 Gene

GeneLoc Exon Structure for
SCARNA10
ECgene alternative splicing isoforms for
SCARNA10

Expression for SCARNA10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCARNA10 Gene

mRNA differential expression in normal tissues according to GTEx for SCARNA10 Gene

This gene is overexpressed in Whole Blood (x7.0).

NURSA nuclear receptor signaling pathways regulating expression of SCARNA10 Gene:

SCARNA10
genes like me logo Genes that share expression patterns with SCARNA10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCARNA10 Gene

Orthologs for SCARNA10 Gene

Evolution for SCARNA10 Gene

ENSEMBL:
Gene Tree for SCARNA10 (if available)
TreeFam:
Gene Tree for SCARNA10 (if available)

No data available for Orthologs for SCARNA10 Gene

Paralogs for SCARNA10 Gene

No data available for Paralogs for SCARNA10 Gene

Variants for SCARNA10 Gene

Sequence variations from dbSNP and Humsavar for SCARNA10 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000011590 -- 6,508,619(+) AGTAA(C/T)TGTGG intron-variant, upstream-variant-2KB
rs1001681729 -- 6,510,403(+) GATTC(C/T)TCCAG intron-variant, nc-transcript-variant
rs1001968398 -- 6,509,089(+) TTTTT(A/T)AAAAG intron-variant, upstream-variant-2KB
rs1002911475 -- 6,510,256(+) TTCAG(C/T)TGGTT intron-variant, nc-transcript-variant
rs1003809718 -- 6,508,260(+) GAGCC(A/C)AGGAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA10 Gene

Variant ID Type Subtype PubMed ID
esv2759876 CNV gain 17122850
esv34325 CNV gain 17911159
esv34390 CNV gain 17911159
nsv8895 CNV gain 18304495

Relevant External Links for SCARNA10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA10 Gene

Disorders for SCARNA10 Gene

Relevant External Links for SCARNA10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA10

No disorders were found for SCARNA10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA10 Gene

Publications for SCARNA10 Gene

  1. A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. (PMID: 11157760) JA!dy B.E. … Kiss T. (EMBO J. 2001) 2 3 64
  2. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X. … Kiss T. (EMBO J. 2002) 3 64

Products for SCARNA10 Gene

Sources for SCARNA10 Gene

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