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Aliases for SCARNA1 Gene

Subcategory (RNA class) for SCARNA1 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA1 Gene

  • Small Cajal Body-Specific RNA 1 2 3
  • ACA35 ScaRNA 3
  • SCARNA17 6
  • ACA35 3

External Ids for SCARNA1 Gene

Summaries for SCARNA1 Gene

GeneCards Summary for SCARNA1 Gene

SCARNA1 (Small Cajal Body-Specific RNA 1) is an RNA Gene, and belongs to the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA1 Gene

Genomics for SCARNA1 Gene

Genomic Location for SCARNA1 Gene

Start:
27,834,401 bp from pter
End:
27,834,566 bp from pter
Size:
166 bases
Orientation:
Plus strand

Genomic View for SCARNA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCARNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA1 Gene

Regulatory Elements for SCARNA1 Gene

Proteins for SCARNA1 Gene

Post-translational modifications for SCARNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA1 Gene

Domains for SCARNA1 Gene

Gene Families for SCARNA1 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA1 Gene

Function for SCARNA1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCARNA1 Gene

Localization for SCARNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA1 Gene

Pathways for SCARNA1 Gene

SuperPathways for SCARNA1 Gene

No Data Available

Interacting Proteins for SCARNA1 Gene

Gene Ontology (GO) - Biological Process for SCARNA1 Gene

None

No data available for Pathways by source for SCARNA1 Gene

Transcripts for SCARNA1 Gene

mRNA/cDNA for SCARNA1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA1 Gene

No ASD Table

Relevant External Links for SCARNA1 Gene

GeneLoc Exon Structure for
SCARNA1
ECgene alternative splicing isoforms for
SCARNA1

Expression for SCARNA1 Gene

mRNA expression in normal human tissues for SCARNA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SCARNA1 Gene Hs.689694

genes like me logo Genes that share expressions with SCARNA1: view

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCARNA1 Gene

Orthologs for SCARNA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA1 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA1 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22767 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA1 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA1 36
  • 71 (a)
OneToMany
SCARNA1 36
  • 61 (a)
OneToMany
SCARNA1 36
  • 71 (a)
OneToMany
SCARNA1 36
  • 62 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA1 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA1 36
  • 66 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SCARNA1 36
  • 54 (a)
OneToOne
Species with no ortholog for SCARNA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA1 Gene

ENSEMBL:
Gene Tree for SCARNA1 (if available)
TreeFam:
Gene Tree for SCARNA1 (if available)

Paralogs for SCARNA1 Gene

No data available for Paralogs for SCARNA1 Gene

Variants for SCARNA1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SCARNA1 Gene

Variant ID Type Subtype PubMed ID
nsv509069 CNV Insertion 20534489

Relevant External Links for SCARNA1 Gene

HapMap Linkage Disequilibrium report
SCARNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SCARNA1 Gene

Disorders for SCARNA1 Gene

No disorders were found for SCARNA1 Gene.

No data available for UniProtKB/Swiss-Prot for SCARNA1 Gene

Publications for SCARNA1 Gene

No publications were found for SCARNA1 Gene.

Products for SCARNA1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCARNA1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCARNA1
    • Block miRNA regulation of SCARNA1 using miScript Target Protectors

    Sources for SCARNA1 Gene

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