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Aliases for SCARNA1 Gene

Subcategory (RNA class) for SCARNA1 Gene

scaRNA

Quality Score for this RNA gene is

3

Aliases for SCARNA1 Gene

  • Small Cajal Body-Specific RNA 1 2 3 5
  • ACA35 ScaRNA 3
  • ACA35 3

External Ids for SCARNA1 Gene

Previous GeneCards Identifiers for SCARNA1 Gene

  • GC01P028033
  • GC01P028161
  • GC01P026417
  • GC01P028164
  • GC01P028168

Summaries for SCARNA1 Gene

GeneCards Summary for SCARNA1 Gene

SCARNA1 (Small Cajal Body-Specific RNA 1) is an RNA Gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCARNA1 Gene

Genomics for SCARNA1 Gene

Regulatory Elements for SCARNA1 Gene

Enhancers for SCARNA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F027779 0.2 Ensembl 11.7 -54.5 -54501 0.2 BCOR JUN NCOR1 ADNP TRIM24 NR2F6 SMARCE1 NR2F1 DPF2 ARID1B RNU6-1245P PPP1R8 SCARNA1 FAM76A STX12 ENSG00000269971 ENSG00000270031
GH01F027857 1 Ensembl ENCODE 11.6 +24.2 24234 1.9 WRNIP1 KLF17 ARID4B ZNF2 RAD21 ZEB1 GATA2 ZNF366 SCRT2 ZNF143 ENSG00000227050 XKR8 SCARNA1 PPP1R8 RNU6-1245P EYA3 ENSG00000278868 THEMIS2
GH01F027771 0.8 FANTOM5 ENCODE 11.6 -61.0 -61036 3.4 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 YY1 FOS ZNF263 RNU6-1245P PPP1R8 SCARNA1 FAM76A STX12 SESN2 PTAFR FGR EYA3 ENSG00000269971
GH01F027777 1 Ensembl ENCODE 11.6 -56.0 -56027 2.5 ATF1 PKNOX1 ZNF2 ZNF335 ZNF121 CREM ZNF263 ZNF362 SP3 SMAD5 RNU6-1245P PPP1R8 SCARNA1 FAM76A STX12 SESN2 TRNAU1AP ATPIF1 ENSG00000269971 ENSG00000270031
GH01F027784 1.1 Ensembl ENCODE 11.6 -47.0 -46966 6.2 HDGF ATF1 PKNOX1 ARNT ZFP64 ZNF766 GATA2 FOS JUNB NCOA1 RNU6-1245P PPP1R8 SCARNA1 STX12 TRNP1 LOC105376896 ENSG00000269971 ENSG00000270031
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCARNA1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCARNA1 Gene

Chromosome:
1
Start:
27,834,401 bp from pter
End:
27,834,566 bp from pter
Size:
166 bases
Orientation:
Plus strand

Genomic View for SCARNA1 Gene

Genes around SCARNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCARNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCARNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCARNA1 Gene

Proteins for SCARNA1 Gene

Post-translational modifications for SCARNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCARNA1 Gene

Domains & Families for SCARNA1 Gene

Gene Families for SCARNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCARNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCARNA1 Gene

Function for SCARNA1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCARNA1 Gene

Localization for SCARNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCARNA1 Gene

Pathways & Interactions for SCARNA1 Gene

SuperPathways for SCARNA1 Gene

No Data Available

Interacting Proteins for SCARNA1 Gene

Gene Ontology (GO) - Biological Process for SCARNA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCARNA1 Gene

Transcripts for SCARNA1 Gene

mRNA/cDNA for SCARNA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCARNA1 Gene

No ASD Table

Relevant External Links for SCARNA1 Gene

GeneLoc Exon Structure for
SCARNA1
ECgene alternative splicing isoforms for
SCARNA1

Expression for SCARNA1 Gene

mRNA expression in normal human tissues for SCARNA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCARNA1 Gene:

SCARNA1

SOURCE GeneReport for Unigene cluster for SCARNA1 Gene:

Hs.689694
genes like me logo Genes that share expression patterns with SCARNA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCARNA1 Gene

Orthologs for SCARNA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SCARNA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA1 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA1 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA1 35
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22767 35
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCARNA1 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA1 35 35 35 35
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA1 35
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCARNA1 35
  • 66 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SCARNA1 35
  • 54 (a)
OneToOne
Species where no ortholog for SCARNA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCARNA1 Gene

ENSEMBL:
Gene Tree for SCARNA1 (if available)
TreeFam:
Gene Tree for SCARNA1 (if available)

Paralogs for SCARNA1 Gene

No data available for Paralogs for SCARNA1 Gene

Variants for SCARNA1 Gene

Sequence variations from dbSNP and Humsavar for SCARNA1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs139328471 -- 27,832,900(+) CTGTG(C/G)TTTGT intron-variant, upstream-variant-2KB
rs140570266 -- 27,832,423(+) GATTC(A/T)AACTC intron-variant, upstream-variant-2KB
rs141357571 -- 27,833,215(+) GCCCA(A/G)CTCCT intron-variant, upstream-variant-2KB
rs143047469 -- 27,834,385(+) ATTTT(A/T)AGATT intron-variant, upstream-variant-2KB
rs143758211 -- 27,833,554(+) GTTTG(C/T)GTAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCARNA1 Gene

Variant ID Type Subtype PubMed ID
nsv509069 CNV insertion 20534489

Relevant External Links for SCARNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCARNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCARNA1 Gene

Disorders for SCARNA1 Gene

Relevant External Links for SCARNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCARNA1

No disorders were found for SCARNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCARNA1 Gene

Publications for SCARNA1 Gene

No publications were found for SCARNA1 Gene.

Products for SCARNA1 Gene

Sources for SCARNA1 Gene

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