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Aliases for SCAPER Gene

Aliases for SCAPER Gene

  • S-Phase Cyclin A-Associated Protein In The ER 2 3
  • Zinc Finger Protein 291 2 3 4
  • S Phase Cyclin A-Associated Protein In The ER 3 4
  • KIAA1454 4 6
  • ZNF291 3 4
  • S Phase Cyclin A-Associated Protein In The Endoplasmic Reticulum 3
  • MSTP063 3
  • Zfp291 3

External Ids for SCAPER Gene

Previous HGNC Symbols for SCAPER Gene

  • ZNF291

Previous GeneCards Identifiers for SCAPER Gene

  • GC15M074428
  • GC15M076640
  • GC15M053397

Summaries for SCAPER Gene

GeneCards Summary for SCAPER Gene

SCAPER (S-Phase Cyclin A-Associated Protein In The ER) is a Protein Coding gene. Diseases associated with SCAPER include composite lymphoma.

UniProtKB/Swiss-Prot for SCAPER Gene

  • CCNA2/CDK2 regulatory protein that transiently maintains CCNA2 in the cytoplasm.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAPER Gene

Genomics for SCAPER Gene

Regulatory Elements for SCAPER Gene

Genomic Location for SCAPER Gene

76,347,904 bp from pter
76,905,455 bp from pter
557,552 bases
Minus strand

Genomic View for SCAPER Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCAPER Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAPER Gene

Proteins for SCAPER Gene

  • Protein details for SCAPER Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    S phase cyclin A-associated protein in the endoplasmic reticulum
    Protein Accession:
    Secondary Accessions:
    • F5H7X8
    • H3BNR7
    • Q3B7X7
    • Q96BS9
    • Q9H3D8
    • Q9NT03
    • Q9P274

    Protein attributes for SCAPER Gene

    1400 amino acids
    Molecular mass:
    158287 Da
    Quaternary structure:
    • Interacts with CCNA2/CDK2 complex, but not with CCNA2/CDC2, CCNB1/CDC2 or CCNE1/CDK2 complexes, at multiple phases of the cell cycle, including S and G2/M.
    • Sequence=AAG47945.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH15212.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI07416.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAK29205.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for SCAPER Gene


neXtProt entry for SCAPER Gene

Proteomics data for SCAPER Gene at MOPED

Post-translational modifications for SCAPER Gene

No data available for DME Specific Peptides for SCAPER Gene

Domains for SCAPER Gene

Gene Families for SCAPER Gene

  • ZNF :Zinc fingers, C2H2-type

Protein Domains for SCAPER Gene


Suggested Antigen Peptide Sequences for SCAPER Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q9BY12
  • Contains 1 C2H2-type zinc finger.
genes like me logo Genes that share domains with SCAPER: view

Function for SCAPER Gene

Molecular function for SCAPER Gene

UniProtKB/Swiss-Prot Function: CCNA2/CDK2 regulatory protein that transiently maintains CCNA2 in the cytoplasm.

Gene Ontology (GO) - Molecular Function for SCAPER Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0008270 zinc ion binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with SCAPER: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCAPER Gene

Localization for SCAPER Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAPER Gene

Endoplasmic reticulum. Nucleus. Note=Predominantly located in the endoplasmic reticulum, only a small portion is detected in the nucleus.

Subcellular locations from

Jensen Localization Image for SCAPER Gene COMPARTMENTS Subcellular localization image for SCAPER gene
Compartment Confidence
endoplasmic reticulum 5
nucleus 5
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SCAPER Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005783 endoplasmic reticulum IEA --
genes like me logo Genes that share ontologies with SCAPER: view

Pathways for SCAPER Gene

SuperPathways for SCAPER Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCAPER Gene


No data available for Pathways by source for SCAPER Gene

Transcripts for SCAPER Gene

Unigene Clusters for SCAPER Gene

S-phase cyclin A-associated protein in the ER:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCAPER

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SCAPER

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAPER Gene

No ASD Table

Relevant External Links for SCAPER Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCAPER Gene

mRNA expression in normal human tissues for SCAPER Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SCAPER Gene

SOURCE GeneReport for Unigene cluster for SCAPER Gene Hs.458986

mRNA Expression by UniProt/SwissProt for SCAPER Gene

Tissue specificity: Widely expressed with highest expression in testis.
genes like me logo Genes that share expressions with SCAPER: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for SCAPER Gene

Orthologs for SCAPER Gene

This gene was present in the common ancestor of animals.

Orthologs for SCAPER Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCAPER 35
  • 99.74 (n)
  • 99.57 (a)
  • 100 (a)
(Bos Taurus)
Mammalia SCAPER 35
  • 92.53 (n)
  • 92.84 (a)
  • 92 (a)
(Canis familiaris)
Mammalia SCAPER 35
  • 90.87 (n)
  • 90.85 (a)
  • 91 (a)
(Mus musculus)
Mammalia Scaper 35
  • 87.94 (n)
  • 88.71 (a)
Scaper 16
Scaper 36
  • 88 (a)
(Monodelphis domestica)
Mammalia SCAPER 36
  • 80 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 83 (a)
-- 36
  • 81 (a)
(Gallus gallus)
Aves SCAPER 35
  • 75.6 (n)
  • 78.64 (a)
  • 76 (a)
(Anolis carolinensis)
Reptilia SCAPER 36
  • 79 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16299 35
tropical clawed frog
(Silurana tropicalis)
Amphibia scaper 35
  • 69.55 (n)
  • 73.07 (a)
(Danio rerio)
Actinopterygii scaper 35
  • 67.66 (n)
  • 73.69 (a)
scaper 36
  • 57 (a)
fruit fly
(Drosophila melanogaster)
Insecta ssp3 36
  • 20 (a)
(Caenorhabditis elegans)
Secernentea Y6B3B.4 36
  • 18 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3404 36
  • 33 (a)
Species with no ortholog for SCAPER:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SCAPER Gene

Gene Tree for SCAPER (if available)
Gene Tree for SCAPER (if available)

Paralogs for SCAPER Gene Pseudogenes for SCAPER Gene

genes like me logo Genes that share paralogs with SCAPER: view

No data available for Paralogs for SCAPER Gene

Variants for SCAPER Gene

Sequence variations from dbSNP and Humsavar for SCAPER Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs157579 -- 76,557,801(+) acaga(C/T)acata intron-variant
rs157757 -- 76,563,586(+) atcag(C/G)tatac intron-variant
rs157758 -- 76,562,128(+) gggca(A/G)caaga intron-variant
rs157759 -- 76,554,649(+) TAAAA(A/T)aaaaa intron-variant
rs157760 -- 76,507,919(+) ATAAT(A/G)AGCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCAPER Gene

Variant ID Type Subtype PubMed ID
esv2749895 CNV Deletion 23290073
esv2749898 CNV Deletion 23290073
nsv904399 CNV Loss 21882294
nsv525769 CNV Loss 19592680
nsv510667 CNV Loss 20534489
nsv507790 CNV Insertion 20534489
esv273470 CNV Insertion 20981092
esv2662931 CNV Deletion 23128226
esv2659496 CNV Deletion 23128226
dgv2417n71 CNV Loss 21882294
nsv471254 CNV Loss 18288195
esv270942 CNV Insertion 20981092
nsv1620 CNV Loss 18451855
nsv904402 CNV Gain 21882294
nsv904403 CNV Loss 21882294
dgv2418n71 CNV Loss 21882294
dgv2419n71 CNV Loss 21882294
dgv2420n71 CNV Gain 21882294
nsv510668 CNV Loss 20534489
nsv116 CNV Loss 15895083
esv1002951 CNV Deletion 20482838
dgv460e199 CNV Deletion 23128226
nsv820890 CNV Deletion 20802225
nsv827392 CNV Loss 20364138
esv33866 CNV Loss 17666407
esv24977 CNV Gain+Loss 19812545
nsv9278 CNV Gain+Loss 18304495
esv32734 CNV Gain+Loss 17666407
nsv820145 CNV Gain 19587683
dgv439n67 CNV Loss 20364138
nsv498853 CNV Loss 21111241
nsv507791 CNV Insertion 20534489
nsv511549 CNV Gain 21212237
esv2421572 CNV Deletion 20811451
nsv442706 CNV CNV 18776908
nsv514786 CNV Loss 21397061
nsv904413 CNV Loss 21882294
nsv457206 CNV Loss 19166990
esv2660976 CNV Deletion 23128226
esv267529 CNV Insertion 20981092
esv272422 CNV Insertion 20981092
dgv757e1 CNV Complex 17122850

Relevant External Links for SCAPER Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCAPER Gene

Disorders for SCAPER Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SCAPER Gene including...

Search for SCAPER Gene in MalaCards »

(1) University of Copenhagen DISEASES for SCAPER Gene

Relevant External Links for SCAPER

Genetic Association Database (GAD)
genes like me logo Genes that share disorders with SCAPER: view

No data available for UniProtKB/Swiss-Prot for SCAPER Gene

Publications for SCAPER Gene

  1. SCAPER, a novel cyclin A-interacting protein that regulates cell cycle progression. (PMID: 17698606) Tsang W.Y. … Dynlacht B.D. (J. Cell Biol. 2007) 2 3 4
  2. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T. … Ohara O. (DNA Res. 2000) 3 4
  3. Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. (PMID: 12421765) Nakayama M. … Ohara O. (Genome Res. 2002) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SCAPER Gene

Sources for SCAPER Gene

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