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Aliases for SCAND2P Gene

Aliases for SCAND2P Gene

  • SCAN Domain Containing 2 Pseudogene 2 3 5
  • SCAN Domain-Containing 2 2 3
  • SCAND2 3 4
  • SCAN Domain-Containing Protein 2 Pseudogene 4
  • Egl Nine Homolog 1 Pseudogene 3
  • SCAN Domain Containing 2 2

External Ids for SCAND2P Gene

Previous HGNC Symbols for SCAND2P Gene

  • SCAND2

Previous GeneCards Identifiers for SCAND2P Gene

  • GC15P085178
  • GC15P085179

Summaries for SCAND2P Gene

GeneCards Summary for SCAND2P Gene

SCAND2P (SCAN Domain Containing 2 Pseudogene) is a Pseudogene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAND2P Gene

Genomics for SCAND2P Gene

Regulatory Elements for SCAND2P Gene

Enhancers for SCAND2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F084630 1.1 ENCODE 20.8 +1.2 1169 4.4 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 NMB GOLGA6L4 WDR73 UBE2Q2P1 SCAND2P GOLGA6L5P SEC11A ADAMTSL3 CSPG4P12 GOLGA6L3
GH15F084652 1.1 ENCODE 17.3 +23.0 22969 3.0 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 NMB WDR73 SCAND2P RN7SL331P ENSG00000259683
GH15F084833 1.3 Ensembl ENCODE 8.4 +206.5 206506 10.4 HDGF ATF1 PKNOX1 ARID4B SIN3A GLI4 FEZF1 ZNF2 YY1 GLIS2 NMB ALPK3 WDR73 ZNF592 GOLGA6L5P GOLGA6L4 LINC00933 CSPG4P11 SCAND2P ENSG00000259683
GH15F084816 1.5 FANTOM5 Ensembl ENCODE 4.7 +190.0 189957 9.6 ELF3 HDGF HDAC1 PKNOX1 ARNT ARID4B DMAP1 ZSCAN9 ZBTB40 RAD21 WDR73 ZNF592 ALPK3 NMB GOLGA6L5P ENSG00000200991 SLC28A1 GOLGA6L3 SEC11A ENSG00000259683
GH15F083842 1 Ensembl ENCODE 4.9 -784.5 -784479 9.2 CTCF MAX RAD21 YY1 ZFHX2 ZNF366 SCRT2 PRDM10 FOS SCRT1 LINC00933 RNU6-1339P RNU6-401P DNM1P51 GOLGA6L4 SCAND2P GOLGA6L5P ENSG00000259683 GC15P083861 GC15M083825
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCAND2P on UCSC Golden Path with GeneCards custom track

Promoters for SCAND2P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001629996 -51 1601 HDGF PKNOX1 ATF1 MLX CREB3L1 ARID4B SIN3A DMAP1 ETS1 YY1

Genomic Location for SCAND2P Gene

Chromosome:
15
Start:
84,631,451 bp from pter
End:
84,647,478 bp from pter
Size:
16,028 bases
Orientation:
Plus strand

Genomic View for SCAND2P Gene

Genes around SCAND2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAND2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAND2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAND2P Gene

Proteins for SCAND2P Gene

  • Protein details for SCAND2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZW5-SCND2_HUMAN
    Recommended name:
    Putative SCAN domain-containing protein SCAND2P
    Protein Accession:
    Q9GZW5
    Secondary Accessions:
    • A8K374
    • Q9H9G1

    Protein attributes for SCAND2P Gene

    Size:
    306 amino acids
    Molecular mass:
    34217 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SCAND2P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCAND2P Gene

Post-translational modifications for SCAND2P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SCAND2P Gene

Domains & Families for SCAND2P Gene

Protein Domains for SCAND2P Gene

Suggested Antigen Peptide Sequences for SCAND2P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9GZW5

UniProtKB/Swiss-Prot:

SCND2_HUMAN :
  • Contains 1 SCAN box domain.
Domain:
  • Contains 1 SCAN box domain.
genes like me logo Genes that share domains with SCAND2P: view

No data available for Gene Families for SCAND2P Gene

Function for SCAND2P Gene

Gene Ontology (GO) - Molecular Function for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0043565 sequence-specific DNA binding IBA --
genes like me logo Genes that share ontologies with SCAND2P: view
genes like me logo Genes that share phenotypes with SCAND2P: view

Animal Model Products

miRNA for SCAND2P Gene

miRTarBase miRNAs that target SCAND2P

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCAND2P Gene

Localization for SCAND2P Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAND2P Gene

Gene Ontology (GO) - Cellular Components for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Subcellular locations from COMPARTMENTS for SCAND2P Gene

Pathways & Interactions for SCAND2P Gene

SuperPathways for SCAND2P Gene

No Data Available

Interacting Proteins for SCAND2P Gene

Gene Ontology (GO) - Biological Process for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Pathways by source and SIGNOR curated interactions for SCAND2P Gene

Transcripts for SCAND2P Gene

Unigene Clusters for SCAND2P Gene

SCAN domain containing 2 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCAND2P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b
SP1: - - -
SP2: -
SP3: - -
SP4:

Relevant External Links for SCAND2P Gene

GeneLoc Exon Structure for
SCAND2P
ECgene alternative splicing isoforms for
SCAND2P

Expression for SCAND2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SCAND2P Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAND2P Gene:

SCAND2P

SOURCE GeneReport for Unigene cluster for SCAND2P Gene:

Hs.658114
genes like me logo Genes that share expression patterns with SCAND2P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCAND2P Gene

Orthologs for SCAND2P Gene

Evolution for SCAND2P Gene

ENSEMBL:
Gene Tree for SCAND2P (if available)
TreeFam:
Gene Tree for SCAND2P (if available)

No data available for Orthologs for SCAND2P Gene

Paralogs for SCAND2P Gene

(10) SIMAP similar genes for SCAND2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCAND2P: view

No data available for Paralogs for SCAND2P Gene

Variants for SCAND2P Gene

Sequence variations from dbSNP and Humsavar for SCAND2P Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1057946 -- 84,639,555(+) AGGAT(G/T)AAAAC nc-transcript-variant
rs10604891 -- 84,639,631(+) GTGAG(-/AG)TCAAG nc-transcript-variant
rs1061737 -- 84,640,559(+) GGCAT(C/G)GTGGC nc-transcript-variant, downstream-variant-500B
rs10637331 -- 84,630,949(+) AATAC(-/AA)AAAAA upstream-variant-2KB
rs10795 -- 84,634,066(+) GCCAC(A/G)GAGGG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SCAND2P Gene

Variant ID Type Subtype PubMed ID
esv2657745 CNV deletion 23128226
esv2672879 CNV deletion 23128226
esv3569831 CNV gain 25503493
esv3637095 CNV gain 21293372
esv3637096 CNV gain 21293372
nsv428310 CNV gain+loss 18775914

Relevant External Links for SCAND2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAND2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCAND2P Gene

Disorders for SCAND2P Gene

Relevant External Links for SCAND2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCAND2P

No disorders were found for SCAND2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAND2P Gene

Publications for SCAND2P Gene

  1. Mapping, characterization, and expression analysis of the SM-20 human homologue, C1orf12, and identification of a novel related gene, SCAND2. (PMID: 11056053) Dupuy D. … Arveiler B. (Genomics 2000) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. SCAN domain-containing 2 gene (SCAND2) is a novel nuclear protein derived from the zinc finger family by exon shuffling. (PMID: 12036577) Dupuy D. … Arveiler B. (Gene 2002) 2 3 64
  5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64

Products for SCAND2P Gene

Sources for SCAND2P Gene

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