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Aliases for SCAND2P Gene

Aliases for SCAND2P Gene

  • SCAN Domain Containing 2 Pseudogene 2 3
  • SCAND2 3 4 6
  • SCAN Domain-Containing 2 2 3
  • SCAN Domain-Containing Protein 2 Pseudogene 4
  • Egl Nine Homolog 1 Pseudogene 3
  • SCAN Domain Containing 2 2

External Ids for SCAND2P Gene

Previous HGNC Symbols for SCAND2P Gene

  • SCAND2

Previous GeneCards Identifiers for SCAND2P Gene

  • GC15P085178
  • GC15P085179

Summaries for SCAND2P Gene

GeneCards Summary for SCAND2P Gene

SCAND2P (SCAN Domain Containing 2 Pseudogene) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAND2P Gene

Genomics for SCAND2P Gene

Genomic Location for SCAND2P Gene

Start:
84,631,451 bp from pter
End:
84,647,478 bp from pter
Size:
16,028 bases
Orientation:
Plus strand

Genomic View for SCAND2P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCAND2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAND2P Gene

No data available for Regulatory Elements for SCAND2P Gene

Proteins for SCAND2P Gene

  • Protein details for SCAND2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZW5-SCND2_HUMAN
    Recommended name:
    Putative SCAN domain-containing protein SCAND2P
    Protein Accession:
    Q9GZW5
    Secondary Accessions:
    • A8K374
    • Q9H9G1

    Protein attributes for SCAND2P Gene

    Size:
    306 amino acids
    Molecular mass:
    34217 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SCAND2P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCAND2P Gene

Proteomics data for SCAND2P Gene at MOPED

Post-translational modifications for SCAND2P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SCAND2P Gene

Domains for SCAND2P Gene

Protein Domains for SCAND2P Gene

Graphical View of Domain Structure for InterPro Entry

Q9GZW5

UniProtKB/Swiss-Prot:

SCND2_HUMAN :
  • Q9GZW5
Domain:
  • Contains 1 SCAN box domain.
genes like me logo Genes that share domains with SCAND2P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SCAND2P Gene

Function for SCAND2P Gene

Gene Ontology (GO) - Molecular Function for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
genes like me logo Genes that share ontologies with SCAND2P: view

Phenotypes for SCAND2P Gene

GenomeRNAi human phenotypes for SCAND2P:
genes like me logo Genes that share phenotypes with SCAND2P: view

miRNA for SCAND2P Gene

miRTarBase miRNAs that target SCAND2P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SCAND2P Gene

Localization for SCAND2P Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAND2P Gene

Gene Ontology (GO) - Cellular Components for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Subcellular locations from COMPARTMENTS for SCAND2P Gene

Pathways for SCAND2P Gene

SuperPathways for SCAND2P Gene

No Data Available

Interacting Proteins for SCAND2P Gene

Gene Ontology (GO) - Biological Process for SCAND2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SCAND2P: view

No data available for Pathways by source for SCAND2P Gene

Transcripts for SCAND2P Gene

Unigene Clusters for SCAND2P Gene

SCAN domain containing 2 pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCAND2P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SCAND2P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAND2P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b
SP1: - - -
SP2: -
SP3: - -
SP4:

Relevant External Links for SCAND2P Gene

GeneLoc Exon Structure for
SCAND2P
ECgene alternative splicing isoforms for
SCAND2P

Expression for SCAND2P Gene

mRNA expression in normal human tissues for SCAND2P Gene

SOURCE GeneReport for Unigene cluster for SCAND2P Gene Hs.658114

genes like me logo Genes that share expressions with SCAND2P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SCAND2P Gene

Orthologs for SCAND2P Gene

Evolution for SCAND2P Gene

ENSEMBL:
Gene Tree for SCAND2P (if available)
TreeFam:
Gene Tree for SCAND2P (if available)

No data available for Orthologs for SCAND2P Gene

Paralogs for SCAND2P Gene

Selected SIMAP similar genes for SCAND2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SCAND2P: view

No data available for Paralogs for SCAND2P Gene

Variants for SCAND2P Gene

Sequence variations from dbSNP and Humsavar for SCAND2P Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs10795 -- 84,634,066(+) GCCAC(A/C/G/T)GAGGG intron-variant, nc-transcript-variant
rs177925 -- 84,635,706(-) CTTAA(A/G)AAAGC intron-variant
rs481653 -- 84,629,852(-) GCCCA(A/G)AATCG upstream-variant-2KB
rs609739 -- 84,629,793(-) TCTGA(A/G)AAGGA upstream-variant-2KB
rs698620 - 84,633,977(-) AGCTG(C/T)GGCTG intron-variant, nc-transcript-variant

Relevant External Links for SCAND2P Gene

HapMap Linkage Disequilibrium report
SCAND2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SCAND2P Gene

Disorders for SCAND2P Gene

No disorders were found for SCAND2P Gene.

No data available for UniProtKB/Swiss-Prot for SCAND2P Gene

Publications for SCAND2P Gene

  1. Mapping, characterization, and expression analysis of the SM-20 human homologue, C1orf12, and identification of a novel related gene, SCAND2. (PMID: 11056053) Dupuy D. … Arveiler B. (Genomics 2000) 2 3 4
  2. SCAN domain-containing 2 gene (SCAND2) is a novel nuclear protein derived from the zinc finger family by exon shuffling. (PMID: 12036577) Dupuy D. … Arveiler B. (Gene 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3

Products for SCAND2P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SCAND2P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SCAND2P
    • Block miRNA regulation of SCAND2P using miScript Target Protectors

    Sources for SCAND2P Gene

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