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Aliases for SCAMP3 Gene

Aliases for SCAMP3 Gene

  • Secretory Carrier Membrane Protein 3 2 3 4 5
  • Propin 1 2 3
  • C1orf3 3 4
  • Secretory Carrier-Associated Membrane Protein 3 3
  • PROPIN1 4

External Ids for SCAMP3 Gene

Previous HGNC Symbols for SCAMP3 Gene

  • C1orf3

Previous GeneCards Identifiers for SCAMP3 Gene

  • GC01M153083
  • GC01M150966
  • GC01M152003
  • GC01M152442
  • GC01M152038
  • GC01M153494
  • GC01M155225
  • GC01M126588

Summaries for SCAMP3 Gene

Entrez Gene Summary for SCAMP3 Gene

  • This gene encodes an integral membrane protein that belongs to the secretory carrier membrane protein family. The encoded protein functions as a carrier to the cell surface in post-golgi recycling pathways. This protein is also involved in protein trafficking in endosomal pathways. Two transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2011]

GeneCards Summary for SCAMP3 Gene

SCAMP3 (Secretory Carrier Membrane Protein 3) is a Protein Coding gene. GO annotations related to this gene include ubiquitin protein ligase binding. An important paralog of this gene is SCAMP1.

UniProtKB/Swiss-Prot for SCAMP3 Gene

  • Functions in post-Golgi recycling pathways. Acts as a recycling carrier to the cell surface.

Gene Wiki entry for SCAMP3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAMP3 Gene

Genomics for SCAMP3 Gene

Regulatory Elements for SCAMP3 Gene

Enhancers for SCAMP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F155231 1.1 Ensembl ENCODE 12.6 +30.2 30204 1.7 ARID1B PKNOX1 POLR2A GLIS1 SPI1 GBA FAM189B SCAMP3 THBS3 MTX1 MIR92B MUC1 KRTCAP2 TRIM46 FDPS
GH01F155307 0.7 ENCODE 12.1 -46.7 -46667 3.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 KIAA0907 LOC101928120 GBA MSTO2P ASH1L-AS1 HCN3 THBS3 ENSG00000271267 DAP3P1 MIR4258
GH01F155211 0.2 ENCODE 11.8 +50.9 50944 0.9 ZBTB33 TRIM46 KRTCAP2 FAM189B SCAMP3 FDPS ENSG00000236263 THBS3
GH01F155206 0.5 ENCODE 11.8 +53.7 53748 4.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 THBS3 FAM189B SCAMP3 TRIM46 KRTCAP2 POU5F1P4 MTX1 LOC105371450
GH01F155316 0.6 ENCODE 11.5 -55.1 -55074 2.3 DRAP1 SAP130 ARID4B RAD21 THRB RARA POLR2A HNF4G NR2F6 CREM HCN3 GBA SCAMP3 FAM189B ASH1L MIR555 RNU6-1297P LOC105371451 RUSC1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SCAMP3 on UCSC Golden Path with GeneCards custom track

Promoters for SCAMP3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000166857 334 1401 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for SCAMP3 Gene

Chromosome:
1
Start:
155,255,979 bp from pter
End:
155,262,434 bp from pter
Size:
6,456 bases
Orientation:
Minus strand

Genomic View for SCAMP3 Gene

Genes around SCAMP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAMP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAMP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAMP3 Gene

Proteins for SCAMP3 Gene

  • Protein details for SCAMP3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14828-SCAM3_HUMAN
    Recommended name:
    Secretory carrier-associated membrane protein 3
    Protein Accession:
    O14828
    Secondary Accessions:
    • A9Z1W6
    • B1AVS6
    • O15128
    • Q96FR8
    • Q9BPY0

    Protein attributes for SCAMP3 Gene

    Size:
    347 amino acids
    Molecular mass:
    38287 Da
    Quaternary structure:
    • Interacts with NEDD4, NEDD4L and TSG101. Interacts with RNF126.

    Alternative splice isoforms for SCAMP3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCAMP3 Gene

Post-translational modifications for SCAMP3 Gene

Other Protein References for SCAMP3 Gene

No data available for DME Specific Peptides for SCAMP3 Gene

Domains & Families for SCAMP3 Gene

Gene Families for SCAMP3 Gene

Protein Domains for SCAMP3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SCAMP3 Gene

Graphical View of Domain Structure for InterPro Entry

O14828

UniProtKB/Swiss-Prot:

SCAM3_HUMAN :
  • Belongs to the SCAMP family.
Family:
  • Belongs to the SCAMP family.
genes like me logo Genes that share domains with SCAMP3: view

Function for SCAMP3 Gene

Molecular function for SCAMP3 Gene

GENATLAS Biochemistry:
secretory carrier membrane protein 3,widely expressed,as component of post-Golgi membranes,homolog of rat secretory carrier membrane protein 37 (SCAMP37),involved in cell surface recycling
UniProtKB/Swiss-Prot Function:
Functions in post-Golgi recycling pathways. Acts as a recycling carrier to the cell surface.

Gene Ontology (GO) - Molecular Function for SCAMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031625 ubiquitin protein ligase binding IPI 23418353
genes like me logo Genes that share ontologies with SCAMP3: view

Phenotypes for SCAMP3 Gene

genes like me logo Genes that share phenotypes with SCAMP3: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SCAMP3

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCAMP3 Gene

Localization for SCAMP3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAMP3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCAMP3 Gene COMPARTMENTS Subcellular localization image for SCAMP3 gene
Compartment Confidence
extracellular 5
golgi apparatus 3
plasma membrane 3
endosome 1
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for SCAMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0043231 intracellular membrane-bounded organelle IDA --
GO:0070062 extracellular exosome IDA 20458337
genes like me logo Genes that share ontologies with SCAMP3: view

Pathways & Interactions for SCAMP3 Gene

SuperPathways for SCAMP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SCAMP3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006892 post-Golgi vesicle-mediated transport TAS 9378760
GO:0010033 response to organic substance IEA --
GO:0015031 protein transport IEA --
GO:0032526 response to retinoic acid IEA --
genes like me logo Genes that share ontologies with SCAMP3: view

No data available for Pathways by source and SIGNOR curated interactions for SCAMP3 Gene

Transcripts for SCAMP3 Gene

Unigene Clusters for SCAMP3 Gene

Secretory carrier membrane protein 3:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAMP3 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ·
SP1: - - - -
SP2: - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - - - - - - -
SP6: - - - - - - -
SP7: - -
SP8: - - - -
SP9: - -
SP10: - - - - - - - - - - - - -
SP11: - - - - - - - - - - - - - - -
SP12: - - - - - -
SP13: - - - - - - - - -
SP14: - - - -
SP15: - - - - - - - - -
SP16: -
SP17: - - - - - - - - -
SP18: - - - - - - - - - - -
SP19:

ExUns: 9c ^ 10a · 10b · 10c · 10d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:

Relevant External Links for SCAMP3 Gene

GeneLoc Exon Structure for
SCAMP3
ECgene alternative splicing isoforms for
SCAMP3

Expression for SCAMP3 Gene

mRNA expression in normal human tissues for SCAMP3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SCAMP3 Gene

This gene is overexpressed in Nasal epithelium (24.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SCAMP3 Gene



Protein tissue co-expression partners for SCAMP3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SCAMP3 Gene:

SCAMP3

SOURCE GeneReport for Unigene cluster for SCAMP3 Gene:

Hs.200600

mRNA Expression by UniProt/SwissProt for SCAMP3 Gene:

O14828-SCAM3_HUMAN
Tissue specificity: Widely expressed, with highest expression in heart and skeletal muscle.
genes like me logo Genes that share expression patterns with SCAMP3: view

Primer Products

No data available for mRNA differential expression in normal tissues for SCAMP3 Gene

Orthologs for SCAMP3 Gene

This gene was present in the common ancestor of animals.

Orthologs for SCAMP3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCAMP3 34 35
  • 99.9 (n)
dog
(Canis familiaris)
Mammalia SCAMP3 34 35
  • 92.89 (n)
cow
(Bos Taurus)
Mammalia SCAMP3 34 35
  • 92.51 (n)
mouse
(Mus musculus)
Mammalia Scamp3 34 16 35
  • 88.18 (n)
rat
(Rattus norvegicus)
Mammalia Scamp3 34
  • 87.51 (n)
oppossum
(Monodelphis domestica)
Mammalia SCAMP3 35
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 43 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SCAMP3 35
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCAMP3 35
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia scamp3 34
  • 71.16 (n)
Str.1919 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.12686 34
zebrafish
(Danio rerio)
Actinopterygii scamp3 34 35
  • 64.57 (n)
fruit fly
(Drosophila melanogaster)
Insecta Scamp 36 35
  • 42 (a)
worm
(Caenorhabditis elegans)
Secernentea scm-1 35
  • 39 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8273 35
  • 46 (a)
OneToMany
Species where no ortholog for SCAMP3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SCAMP3 Gene

ENSEMBL:
Gene Tree for SCAMP3 (if available)
TreeFam:
Gene Tree for SCAMP3 (if available)

Paralogs for SCAMP3 Gene

Paralogs for SCAMP3 Gene

(4) SIMAP similar genes for SCAMP3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SCAMP3: view

Variants for SCAMP3 Gene

Sequence variations from dbSNP and Humsavar for SCAMP3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1318328 --
rs760073 --
rs909106 --
rs909107 --

Structural Variations from Database of Genomic Variants (DGV) for SCAMP3 Gene

Variant ID Type Subtype PubMed ID
dgv3n68 CNV loss 17160897
esv23319 CNV gain 19812545
esv2758971 CNV gain 17122850
esv33869 CNV loss 17666407
nsv1008748 CNV loss 25217958
nsv1011773 CNV gain 25217958
nsv436027 CNV insertion 17901297
nsv470741 CNV loss 18288195
nsv831636 CNV loss 17160897

Variation tolerance for SCAMP3 Gene

Residual Variation Intolerance Score: 19.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.60; 30.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SCAMP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAMP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCAMP3 Gene

Disorders for SCAMP3 Gene

Relevant External Links for SCAMP3

Genetic Association Database (GAD)
SCAMP3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCAMP3

No disorders were found for SCAMP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAMP3 Gene

Publications for SCAMP3 Gene

  1. Identification of three additional genes contiguous to the glucocerebrosidase locus on chromosome 1q21: implications for Gaucher disease. (PMID: 9331372) Winfield S.L. … Sidransky E. (Genome Res. 1997) 2 3 4 64
  2. The E3 ubiquitin ligases RNF126 and Rabring7 regulate endosomal sorting of the epidermal growth factor receptor. (PMID: 23418353) Smith C.J. … McGlade C.J. (J. Cell. Sci. 2013) 3 4 64
  3. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. (PMID: 21102463) Franke A. … Parkes M. (Nat. Genet. 2010) 3 46 64
  4. SCAMP3 negatively regulates epidermal growth factor receptor degradation and promotes receptor recycling. (PMID: 19158374) Aoh Q.L. … Castle J.D. (Mol. Biol. Cell 2009) 3 4 64
  5. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PMID: 15592455) Rush J. … Comb M.J. (Nat. Biotechnol. 2005) 3 4 64

Products for SCAMP3 Gene

Sources for SCAMP3 Gene

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