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Aliases for SCAMP2 Gene

Aliases for SCAMP2 Gene

  • Secretory Carrier Membrane Protein 2 2 3 4 5

External Ids for SCAMP2 Gene

Previous GeneCards Identifiers for SCAMP2 Gene

  • GC15P070892
  • GC15P068180
  • GC15M072711
  • GC15M072853
  • GC15M072924
  • GC15M075136
  • GC15M051934

Summaries for SCAMP2 Gene

Entrez Gene Summary for SCAMP2 Gene

  • This gene product belongs to the SCAMP family of proteins which are secretory carrier membrane proteins. They function as carriers to the cell surface in post-golgi recycling pathways. Different family members are highly related products of distinct genes, and are usually expressed together. These findings suggest that the SCAMPs may function at the same site during vesicular transport rather than in separate pathways. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]

GeneCards Summary for SCAMP2 Gene

SCAMP2 (Secretory Carrier Membrane Protein 2) is a Protein Coding gene. Among its related pathways are Arf6 trafficking events and Monoamine Transport. An important paralog of this gene is SCAMP3.

UniProtKB/Swiss-Prot for SCAMP2 Gene

  • Functions in post-Golgi recycling pathways. Acts as a recycling carrier to the cell surface.

Gene Wiki entry for SCAMP2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAMP2 Gene

Genomics for SCAMP2 Gene

Regulatory Elements for SCAMP2 Gene

Enhancers for SCAMP2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SCAMP2 on UCSC Golden Path with GeneCards custom track

Promoters for SCAMP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SCAMP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCAMP2 Gene

Chromosome:
15
Start:
74,843,730 bp from pter
End:
74,873,365 bp from pter
Size:
29,636 bases
Orientation:
Minus strand

Genomic View for SCAMP2 Gene

Genes around SCAMP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAMP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAMP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAMP2 Gene

Proteins for SCAMP2 Gene

  • Protein details for SCAMP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15127-SCAM2_HUMAN
    Recommended name:
    Secretory carrier-associated membrane protein 2
    Protein Accession:
    O15127
    Secondary Accessions:
    • B2RDF0
    • Q9BQE8

    Protein attributes for SCAMP2 Gene

    Size:
    329 amino acids
    Molecular mass:
    36649 Da
    Quaternary structure:
    • Interacts with SLC6A4 and SLC9A7.

neXtProt entry for SCAMP2 Gene

Proteomics data for SCAMP2 Gene at MOPED

Post-translational modifications for SCAMP2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SCAMP2 Gene

Domains & Families for SCAMP2 Gene

Gene Families for SCAMP2 Gene

Protein Domains for SCAMP2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SCAMP2 Gene

Graphical View of Domain Structure for InterPro Entry

O15127

UniProtKB/Swiss-Prot:

SCAM2_HUMAN :
  • Belongs to the SCAMP family.
Family:
  • Belongs to the SCAMP family.
genes like me logo Genes that share domains with SCAMP2: view

Function for SCAMP2 Gene

Molecular function for SCAMP2 Gene

GENATLAS Biochemistry:
secretory carrier membrane protein 2,widely distributed as component of post-Golgi membranes,involved in cell surface recycling
UniProtKB/Swiss-Prot Function:
Functions in post-Golgi recycling pathways. Acts as a recycling carrier to the cell surface.
genes like me logo Genes that share phenotypes with SCAMP2: view

Animal Model Products

miRNA for SCAMP2 Gene

miRTarBase miRNAs that target SCAMP2

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SCAMP2 Gene

Localization for SCAMP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAMP2 Gene

Golgi apparatus, trans-Golgi network membrane; Multi-pass membrane protein. Recycling endosome membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCAMP2 Gene COMPARTMENTS Subcellular localization image for SCAMP2 gene
Compartment Confidence
endosome 5
extracellular 5
golgi apparatus 5
nucleus 5
plasma membrane 4
peroxisome 1

Gene Ontology (GO) - Cellular Components for SCAMP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0043231 intracellular membrane-bounded organelle IDA --
GO:0055038 recycling endosome membrane IDA 15840657
GO:0070062 extracellular exosome IDA 20458337
genes like me logo Genes that share ontologies with SCAMP2: view

Pathways & Interactions for SCAMP2 Gene

genes like me logo Genes that share pathways with SCAMP2: view

Pathways by source for SCAMP2 Gene

Interacting Proteins for SCAMP2 Gene

Gene Ontology (GO) - Biological Process for SCAMP2 Gene

None

No data available for SIGNOR curated interactions for SCAMP2 Gene

Drugs & Compounds for SCAMP2 Gene

No Compound Related Data Available

Transcripts for SCAMP2 Gene

Unigene Clusters for SCAMP2 Gene

Secretory carrier membrane protein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SCAMP2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10
SP1: - - - - -
SP2: - - - - -
SP3: -
SP4: - - -
SP5: -
SP6:

Relevant External Links for SCAMP2 Gene

GeneLoc Exon Structure for
SCAMP2
ECgene alternative splicing isoforms for
SCAMP2

Expression for SCAMP2 Gene

mRNA expression in normal human tissues for SCAMP2 Gene

Protein differential expression in normal tissues from HIPED for SCAMP2 Gene

This gene is overexpressed in Nasal epithelium (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SCAMP2 Gene



SOURCE GeneReport for Unigene cluster for SCAMP2 Gene Hs.458917

mRNA Expression by UniProt/SwissProt for SCAMP2 Gene

O15127-SCAM2_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expression patterns with SCAMP2: view

Protein tissue co-expression partners for SCAMP2 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for SCAMP2 Gene

Orthologs for SCAMP2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SCAMP2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SCAMP2 35
  • 90.96 (n)
  • 92.68 (a)
SCAMP2 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCAMP2 35
  • 89.97 (n)
  • 90.58 (a)
SCAMP2 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scamp2 35
  • 87.23 (n)
  • 88.75 (a)
Scamp2 16
Scamp2 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SCAMP2 35
  • 99.7 (n)
  • 99.7 (a)
SCAMP2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Scamp2 35
  • 87.03 (n)
  • 88.15 (a)
oppossum
(Monodelphis domestica)
Mammalia SCAMP2 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCAMP2 36
  • 58 (a)
OneToOne
chicken
(Gallus gallus)
Aves SCAMP2 35
  • 77.49 (n)
  • 80.19 (a)
SCAMP2 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCAMP2 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia scamp2 35
  • 67.6 (n)
  • 73.52 (a)
Str.4084 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.24270 35
zebrafish
(Danio rerio)
Actinopterygii ceacam1 35
scamp2l 35
  • 68.23 (n)
  • 66.25 (a)
scamp2 36
  • 64 (a)
OneToMany
scamp2l 36
  • 65 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Scamp 37
  • 39 (a)
Scamp 36
  • 38 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea scm-1 36
  • 34 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons SC3 35
  • 43.69 (n)
  • 30.68 (a)
rice
(Oryza sativa)
Liliopsida Os01g0780500 35
  • 45.51 (n)
  • 31.15 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8273 36
  • 44 (a)
OneToMany
Species with no ortholog for SCAMP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SCAMP2 Gene

ENSEMBL:
Gene Tree for SCAMP2 (if available)
TreeFam:
Gene Tree for SCAMP2 (if available)

Paralogs for SCAMP2 Gene

Paralogs for SCAMP2 Gene

(4) SIMAP similar genes for SCAMP2 Gene using alignment to 8 proteins:

Pseudogenes.org Pseudogenes for SCAMP2 Gene

genes like me logo Genes that share paralogs with SCAMP2: view

Variants for SCAMP2 Gene

Sequence variations from dbSNP and Humsavar for SCAMP2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs5813769 -- 74,854,424(-) AGGAT(-/G)GCAAA intron-variant
rs6495124 -- 74,862,438(+) gggca(C/T)ggtgg intron-variant
rs6495125 -- 74,862,486(+) cagga(A/G)aactg intron-variant
rs11857695 -- 74,873,410(+) TGACG(G/T)CACCG upstream-variant-2KB
rs729263 -- 74,870,410(+) TTCTG(A/G)TTCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCAMP2 Gene

Variant ID Type Subtype PubMed ID
nsv904380 CNV Loss 21882294
nsv833055 CNV Loss 17160897
nsv904381 CNV Loss 21882294
nsv904382 CNV Loss 21882294
nsv827386 CNV Gain 20364138
nsv827388 CNV Gain 20364138

Variation tolerance for SCAMP2 Gene

Residual Variation Intolerance Score: 52.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.38; 54.13% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SCAMP2 Gene

HapMap Linkage Disequilibrium report
SCAMP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCAMP2 Gene

Disorders for SCAMP2 Gene

Relevant External Links for SCAMP2

Genetic Association Database (GAD)
SCAMP2
Human Genome Epidemiology (HuGE) Navigator
SCAMP2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCAMP2

No disorders were found for SCAMP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAMP2 Gene

Publications for SCAMP2 Gene

  1. Three mammalian SCAMPs (secretory carrier membrane proteins) are highly related products of distinct genes having similar subcellular distributions. (PMID: 9378760) Singleton D.R. … Castle J.D. (J. Cell Sci. 1997) 2 3 4 67
  2. Secretory Carrier Membrane Protein 2 Regulates Cell-surface Targeting of Brain-enriched Na+/H+ Exchanger NHE5. (PMID: 19276089) Diering G.H. … Numata M. (J. Biol. Chem. 2009) 3 23
  3. Secretory carrier membrane protein SCAMP2 and phosphatidylinositol 4,5-bisphosphate interactions in the regulation of dense core vesicle exocytosis. (PMID: 17713930) Liao H. … Castle D. (Biochemistry 2007) 3 23
  4. Subcellular redistribution of the serotonin transporter by secretory carrier membrane protein 2. (PMID: 16870614) Mueller H.K. … Haase J. (J. Biol. Chem. 2006) 3 23
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for SCAMP2 Gene

Sources for SCAMP2 Gene

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