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Aliases for SCAMP1-AS1 Gene

Subcategory (RNA class) for SCAMP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCAMP1-AS1 Gene

  • SCAMP1 Antisense RNA 1 2 3 5
  • CTD-2037K23.2 3

External Ids for SCAMP1-AS1 Gene

Summaries for SCAMP1-AS1 Gene

GeneCards Summary for SCAMP1-AS1 Gene

SCAMP1-AS1 (SCAMP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SCAMP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAMP1-AS1 Gene

Genomics for SCAMP1-AS1 Gene

Regulatory Elements for SCAMP1-AS1 Gene

Enhancers for SCAMP1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H077994 2 dbSUPER 13.4 +365.1 365116 1 PKNOX1 FEZF1 ZNF2 ZNF121 KLF7 YY2 ZNF623 ZNF610 GLIS1 MYNN SCAMP1-AS1 TRQ-TTG7-1 ENSG00000253572
GH05H077629 1.6 FANTOM5 Ensembl ENCODE 10.4 +730.1 730110 2 HDGF PKNOX1 ZNF133 ARID4B SIN3A FEZF1 GLI4 ZNF121 GLIS2 ZNF143 SCAMP1-AS1 RPL7P23 GC05M077626 WDR41
GH05H078503 1.9 FANTOM5 Ensembl ENCODE dbSUPER 8.7 -147.5 -147487 8 HDGF FEZF1 ZNF2 YY1 FOS REST ZNF592 ZNF610 SMARCA4 GLIS1 LHFPL2 SCAMP1-AS1 SCAMP1 ARSB AP3B1 PIR51536
GH05H078482 1.8 FANTOM5 Ensembl ENCODE dbSUPER 8.3 -123.9 -123862 2 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 CBX5 GATA2 ELK1 ZNF143 SCAMP1-AS1 SCAMP1 AP3B1 PIR51536
GH05H078517 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.9 -158.6 -158622 2 PKNOX1 FOXA2 MLX ARID4B DMAP1 FOS ATF7 RUNX3 PPARG KAT8 SCAMP1-AS1 LHFPL2 SCAMP1 AP3B1 ARSB PIR51536 GC05M078588
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SCAMP1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000182930 -259 2401 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for SCAMP1-AS1 Gene

Chromosome:
5
Start:
78,342,365 bp from pter
End:
78,360,541 bp from pter
Size:
18,177 bases
Orientation:
Minus strand

Genomic View for SCAMP1-AS1 Gene

Genes around SCAMP1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAMP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAMP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAMP1-AS1 Gene

Proteins for SCAMP1-AS1 Gene

Post-translational modifications for SCAMP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAMP1-AS1 Gene

Domains & Families for SCAMP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCAMP1-AS1 Gene

Function for SCAMP1-AS1 Gene

Phenotypes From GWAS Catalog for SCAMP1-AS1 Gene

Phenotypes for SCAMP1-AS1 Gene

GenomeRNAi human phenotypes for SCAMP1-AS1:
genes like me logo Genes that share phenotypes with SCAMP1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAMP1-AS1 Gene

Localization for SCAMP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCAMP1-AS1 Gene

Pathways & Interactions for SCAMP1-AS1 Gene

SuperPathways for SCAMP1-AS1 Gene

No Data Available

Interacting Proteins for SCAMP1-AS1 Gene

Gene Ontology (GO) - Biological Process for SCAMP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCAMP1-AS1 Gene

Drugs & Compounds for SCAMP1-AS1 Gene

No Compound Related Data Available

Transcripts for SCAMP1-AS1 Gene

mRNA/cDNA for SCAMP1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAMP1-AS1 Gene

No ASD Table

Relevant External Links for SCAMP1-AS1 Gene

GeneLoc Exon Structure for
SCAMP1-AS1
ECgene alternative splicing isoforms for
SCAMP1-AS1

Expression for SCAMP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SCAMP1-AS1 Gene

genes like me logo Genes that share expression patterns with SCAMP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAMP1-AS1 Gene

Orthologs for SCAMP1-AS1 Gene

Evolution for SCAMP1-AS1 Gene

ENSEMBL:
Gene Tree for SCAMP1-AS1 (if available)
TreeFam:
Gene Tree for SCAMP1-AS1 (if available)

No data available for Orthologs for SCAMP1-AS1 Gene

Paralogs for SCAMP1-AS1 Gene

No data available for Paralogs for SCAMP1-AS1 Gene

Variants for SCAMP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SCAMP1-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000083589 -- 78,359,737(+) GTGTT(C/G)GAAAA nc-transcript-variant, upstream-variant-2KB
rs1000245021 -- 78,359,640(+) CGCCT(C/T)GGCCT nc-transcript-variant, upstream-variant-2KB
rs1000779760 -- 78,358,724(+) CGTAT(A/G)AGAAC downstream-variant-500B, upstream-variant-2KB
rs1001635671 -- 78,361,845(+) TTACT(C/G)CTGGT intron-variant, upstream-variant-2KB
rs1001663009 -- 78,361,709(+) TGTTG(A/G)TTGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SCAMP1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1133094 OTHER inversion 24896259

Relevant External Links for SCAMP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAMP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SCAMP1-AS1 Gene

Disorders for SCAMP1-AS1 Gene

Relevant External Links for SCAMP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SCAMP1-AS1

No disorders were found for SCAMP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SCAMP1-AS1 Gene

Publications for SCAMP1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SCAMP1-AS1 Gene

Sources for SCAMP1-AS1 Gene

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