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Aliases for SCAI Gene

Aliases for SCAI Gene

  • Suppressor Of Cancer Cell Invasion 2 3
  • Suppressor Of Cancer Cell Invasion Protein 3 4
  • C9orf126 3 4
  • Chromosome 9 Open Reading Frame 126 2
  • Protein SCAI 3
  • NET40 3

External Ids for SCAI Gene

Previous HGNC Symbols for SCAI Gene

  • C9orf126

Previous GeneCards Identifiers for SCAI Gene

  • GC09M126755
  • GC09M127704
  • GC09M097317

Summaries for SCAI Gene

Entrez Gene Summary for SCAI Gene

  • This gene encodes a regulator of cell migration. The encoded protein appears to function in the RhoA (ras homolog gene family, member A)-Dia1 (diaphanous homolog 1) signal transduction pathway. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2010]

GeneCards Summary for SCAI Gene

SCAI (Suppressor Of Cancer Cell Invasion) is a Protein Coding gene. GO annotations related to this gene include transcription corepressor activity.

UniProtKB/Swiss-Prot for SCAI Gene

  • Tumor suppressor which functions to suppress MKL1-induced SRF transcriptional activity. May function in the RHOA-DIAPH1 signal transduction pathway and regulate cell migration through transcriptional regulation of ITGB1.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAI Gene

Genomics for SCAI Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SCAI Gene

Start:
124,942,608 bp from pter
End:
125,143,559 bp from pter
Size:
200,952 bases
Orientation:
Minus strand

Genomic View for SCAI Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SCAI Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SCAI Gene

No data available for Regulatory Elements for SCAI Gene

Proteins for SCAI Gene

  • Protein details for SCAI Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9R8-SCAI_HUMAN
    Recommended name:
    Protein SCAI
    Protein Accession:
    Q8N9R8
    Secondary Accessions:
    • Q3SXZ1
    • Q3SXZ2
    • Q5T163
    • Q8N1I4

    Protein attributes for SCAI Gene

    Size:
    606 amino acids
    Molecular mass:
    70399 Da
    Quaternary structure:
    • Interacts with DIAPH1 (By similarity). Forms a nuclear ternary complex with MKL1 and SRF.

    Alternative splice isoforms for SCAI Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SCAI Gene

Proteomics data for SCAI Gene at MOPED

Post-translational modifications for SCAI Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SCAI Gene

No data available for DME Specific Peptides for SCAI Gene

Domains for SCAI Gene

Protein Domains for SCAI Gene

Suggested Antigen Peptide Sequences for SCAI Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N9R8

UniProtKB/Swiss-Prot:

SCAI_HUMAN :
  • Q8N9R8
Family:
  • Belongs to the SCAI family.
genes like me logo Genes that share domains with SCAI: view

No data available for Gene Families for SCAI Gene

Function for SCAI Gene

Molecular function for SCAI Gene

UniProtKB/Swiss-Prot Function: Tumor suppressor which functions to suppress MKL1-induced SRF transcriptional activity. May function in the RHOA-DIAPH1 signal transduction pathway and regulate cell migration through transcriptional regulation of ITGB1.

Gene Ontology (GO) - Molecular Function for SCAI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003714 transcription corepressor activity IMP 19350017
GO:0005515 protein binding IPI 19350017
genes like me logo Genes that share ontologies with SCAI: view

Phenotypes for SCAI Gene

genes like me logo Genes that share phenotypes with SCAI: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCAI

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SCAI Gene

Localization for SCAI Gene

Subcellular locations from UniProtKB/Swiss-Prot for SCAI Gene

Membrane; Single-pass membrane protein. Nucleus. Cytoplasm. Note=Nuclear localization is required for inhibition of MKL1. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SCAI Gene COMPARTMENTS Subcellular localization image for SCAI gene
Compartment Confidence
nucleus 5
mitochondrion 2

Gene Ontology (GO) - Cellular Components for SCAI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IEA --
GO:0016021 integral component of membrane IEA --
GO:0031965 nuclear membrane IDA --
genes like me logo Genes that share ontologies with SCAI: view

Pathways for SCAI Gene

SuperPathways for SCAI Gene

No Data Available

Interacting Proteins for SCAI Gene

Gene Ontology (GO) - Biological Process for SCAI Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0030336 negative regulation of cell migration IMP 19350017
GO:0035024 negative regulation of Rho protein signal transduction ISS --
genes like me logo Genes that share ontologies with SCAI: view

No data available for Pathways by source for SCAI Gene

Transcripts for SCAI Gene

Unigene Clusters for SCAI Gene

Suppressor of cancer cell invasion:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SCAI

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SCAI

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAI Gene

No ASD Table

Relevant External Links for SCAI Gene

GeneLoc Exon Structure for
SCAI
ECgene alternative splicing isoforms for
SCAI

Expression for SCAI Gene

mRNA expression in normal human tissues for SCAI Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SCAI Gene

SOURCE GeneReport for Unigene cluster for SCAI Gene Hs.59504

genes like me logo Genes that share expressions with SCAI: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SCAI Gene

Orthologs for SCAI Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SCAI Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCAI 35
  • 99.47 (n)
  • 99.68 (a)
SCAI 36
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCAI 35
  • 95.54 (n)
  • 99.5 (a)
SCAI 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCAI 35
  • 93.22 (n)
  • 97.93 (a)
SCAI 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Scai 35
  • 91.53 (n)
  • 97.52 (a)
Scai 16
Scai 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SCAI 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SCAI 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Scai 35
  • 91.8 (n)
  • 97.69 (a)
chicken
(Gallus gallus)
Aves SCAI 35
  • 84.54 (n)
  • 97.52 (a)
SCAI 36
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SCAI 36
  • 90 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.8413 35
tropical clawed frog
(Silurana tropicalis)
Amphibia scai 35
  • 78.21 (n)
  • 92.01 (a)
zebrafish
(Danio rerio)
Actinopterygii scai 35
  • 71.74 (n)
  • 81.77 (a)
scai 36
  • 82 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005770 35
  • 54.85 (n)
  • 55.64 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG13293 35
  • 55.07 (n)
  • 55.31 (a)
CG13293 36
  • 50 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G03570 35
  • 46.48 (n)
  • 37.9 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToOne
Species with no ortholog for SCAI:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SCAI Gene

ENSEMBL:
Gene Tree for SCAI (if available)
TreeFam:
Gene Tree for SCAI (if available)

Paralogs for SCAI Gene

Selected SIMAP similar genes for SCAI Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SCAI: view

No data available for Paralogs for SCAI Gene

Variants for SCAI Gene

Sequence variations from dbSNP and Humsavar for SCAI Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs360194 -- 125,044,190(-) cctcc(C/T)atgct intron-variant
rs360195 -- 125,043,903(-) tccca(C/G)ccctc intron-variant
rs360196 -- 125,043,697(-) gttgc(A/G)gtgag intron-variant
rs360197 -- 125,043,138(-) GTAAT(C/T)CCAGC intron-variant
rs360198 -- 125,023,540(+) AATCT(A/G)TATCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SCAI Gene

Variant ID Type Subtype PubMed ID
esv2442459 CNV Deletion 19546169
esv2739041 CNV Deletion 23290073
nsv893838 CNV Gain 21882294
nsv893839 CNV Loss 21882294

Relevant External Links for SCAI Gene

HapMap Linkage Disequilibrium report
SCAI

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SCAI Gene

Disorders for SCAI Gene

(1) University of Copenhagen DISEASES for SCAI Gene

Relevant External Links for SCAI

Genetic Association Database (GAD)
SCAI
Human Genome Epidemiology (HuGE) Navigator
SCAI
genes like me logo Genes that share disorders with SCAI: view

No data available for UniProtKB/Swiss-Prot for SCAI Gene

Publications for SCAI Gene

  1. SCAI acts as a suppressor of cancer cell invasion through the transcriptional control of beta1-integrin. (PMID: 19350017) Brandt D.T. … Grosse R. (Nat. Cell Biol. 2009) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SCAI Gene

Sources for SCAI Gene

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