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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SCAF11 Gene

protein-coding   GIFtS: 49
GCID: GC12M046313

SR-related CTD-associated factor 11

(Previous names: splicing factor, arginine/serine-rich 2, interacting protein,...)
(Previous symbols: SFRS2IP, SRSF2IP)
 Explore 7 diseases affiliated with
SCAF11 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for SCAF11    

Aliases
for SCAF11 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
SR-Related CTD-Associated Factor 111 2     Splicing Factor, Arginine/Serine-Rich 2-Interacting Protein2 3
CASP111 2 3 5     Splicing Regulatory Protein 1292 3
SFRS2IP1 2 3 5     CTD-Associated SR Protein 112 3
SIP11 2 3 5     SC35-Interacting Protein 12 3
SRSF2IP1 2 3     SR-Related And CTD-Associated Factor 112 3
SRRP1291 2 5     SRSF2-Interacting Protein2 3
Serine/Arginine-Rich Splicing Factor 2, Interacting Protein1 2     Protein SCAF112
Splicing Factor, Arginine/Serine-Rich 2, Interacting Protein1 2     SFRS2-Interacting Protein2
Renal Carcinoma Antigen NY-REN-402 3     SRrp1293
Serine/Arginine-Rich Splicing Factor 2-Interacting Protein2 3     

External Ids:    HGNC: 107841   Entrez Gene: 91692   Ensembl: ENSG000001392187   OMIM: 6036685   UniProtKB: Q995903   

Export aliases for SCAF11 gene to outside databases


Summaries
for SCAF11 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: SCAFB_HUMAN, Q99590
Function: Plays a role in pre-mRNA alternative splicing by regulating spliceosome assembly

Gene Wiki entry for SCAF11 (SFRS2IP)


Genomic Views
for SCAF11 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for SCAF11
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SCAF11 promoter sequence
   Search SABiosciences Chromatin IP Primers for SCAF11

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SCAF11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q12   Ensembl cytogenetic band:  12q12   HGNC cytogenetic band: 12q13.11

SCAF11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SCAF11 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M046313:  view genomic region     (about GC identifiers)

Start:
 46,312,914 bp from pter      End:
 46,385,903 bp from pter
Size:
 72,990 bases      Orientation:
 minus strand

Proteins
for SCAF11 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: SCAFB_HUMAN, Q99590 (See protein sequence)
Recommended Name: Protein SCAF11  
Size: 1463 amino acids; 164652 Da
Subunit: Interacts with SRSF2/SFRS2, U2AF2 and SNRNP70
Subcellular location: Nucleus
Sequence caution: Sequence=AAC39565.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=AAC39565.1; Type=Frameshift; Positions=62; Sequence=AAH40951.1; Type=Erroneous initiation; Note=Translation
N-terminally extended; Sequence=AAH40951.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential
poly-A sequence;
Secondary accessions: A6NEU9 A6NLW5 Q8IW59
Alternative splicing: 2 isoforms:  Q99590-1   Q99590-2   

Explore the universe of human proteins at neXtProt for SCAF11: NX_Q99590

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q99590

    • SCAF11 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_004710.2  
    ENSEMBL proteins: 
     ENSP00000449812   ENSP00000358374   ENSP00000448864   ENSP00000446746   ENSP00000266589  
     ENSP00000378840   ENSP00000378839   ENSP00000413036  

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    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for SCAF11

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--


    SCAF11 for ontologies           About GeneDecksing



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    Uscn Antibodies for SCAF11
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    Uscn ELISAs and CLIAs for SCAF11

    Protein Domains /
    Families
    for SCAF11 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    SCAF11 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR017907 Znf_RING_CS
     IPR001841 Znf_RING
     IPR013083 Znf_RING/FYVE/PHD

    Graphical View of Domain Structure for InterPro Entry Q99590

    ProtoNet protein and cluster: Q99590

    UniProtKB/Swiss-Prot: SCAFB_HUMAN, Q99590
    Similarity: Contains 1 RING-type zinc finger


    Function
    for SCAF11 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: SCAFB_HUMAN, Q99590
    Function: Plays a role in pre-mRNA alternative splicing by regulating spliceosome assembly

    miRNA
    Products:            		miRTarBase miRNAs that target SCAF11:
    hsa-mir-141 (MIRT000318), hsa-mir-200b (MIRT002482), hsa-mir-200a (MIRT002481), hsa-mir-429 (MIRT003719), hsa-mir-205 (MIRT002479)

    OriGene 3'-UTR Clone: SCAF11
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SCAF11
    8/65 QIAGEN miScript miRNA Assays for microRNAs that regulate SCAF11 (see all 65):
    hsa-miR-323-3p hsa-miR-199a-3p hsa-miR-411 hsa-miR-15a hsa-miR-4325 hsa-miR-200b hsa-miR-92b hsa-miR-27a
    SwitchGear 3'UTR luciferase reporter plasmid: SCAF11 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SCAF11
    OriGene shRNA RFP: SCAF11
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SCAF11

    Gene Editing
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    Clone
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    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SCAF11 (see all 2)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SCAF11 

    Cell Line
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    Search LifeMap BioReagents cell lines for SCAF11

    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SCAF11

    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI9447963
    GO:0008270zinc ion binding IEA--


    SCAF11 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for SCAF11:
     Synthetic lethal with imatinib 


    Pathways & Interactions
    for SCAF11 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SCAF11

    STRING Interaction Network Preview (showing 5 interactants - click image to see 12)

    5/14 Interacting proteins for SCAF11 (Q995902, 3 ENSP000003583744) via UniProtKB, MINT, STRING, and/or I2D (see all 14)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PSEN1P497683, ENSP000003263664I2D: score=2 STRING: ENSP00000326366
    SNRNP70P086213, ENSP000002214484I2D: score=2 STRING: ENSP00000221448
    SRSF1Q079553, ENSP000002589624I2D: score=2 STRING: ENSP00000258962
    SRSF2Q011303, ENSP000003508774I2D: score=2 STRING: ENSP00000350877
    U2AF2P263683, ENSP000003078634I2D: score=3 STRING: ENSP00000307863
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000245spliceosomal complex assembly IDA9447963
    GO:0000375RNA splicing, via transesterification reactions IDA9447963
    GO:0006397mRNA processing TAS9447963
    GO:0008380RNA splicing IDA9447963


    SCAF11 for ontologies           About GeneDecksing



    Drugs & Compounds
    for SCAF11 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SCAF11
    Search CenterWatch for drugs/clinical trials and news about SCAF11 / SCAFB 

    Transcripts
    for SCAF11 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for SCAF11 gene: 
    NM_004719.2  

    Unigene Cluster for SCAF11:

    SR-related CTD-associated factor 11
    Hs.743951  [show with all ESTs]
    Unigene Representative Sequence: NM_004719
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000547654 ENST00000550629 ENST00000465950(uc001row.3) ENST00000369367(uc001rox.3)
    ENST00000549162 ENST00000550893 ENST00000547950 ENST00000547018 ENST00000484275
    ENST00000546534 ENST00000551391 ENST00000266589(uc009zki.1) ENST00000395454(uc001roz.3)
    ENST00000395453 ENST00000474828 ENST00000419565(uc001roy.1)

    miRNA
    Products:             		 OriGene 3'-UTR Clone: SCAF11
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SCAF11
    8/65 QIAGEN miScript miRNA Assays for microRNAs that regulate SCAF11 (see all 65):
    hsa-miR-323-3p hsa-miR-199a-3p hsa-miR-411 hsa-miR-15a hsa-miR-4325 hsa-miR-200b hsa-miR-92b hsa-miR-27a
    SwitchGear 3'UTR luciferase reporter plasmid: SCAF11 3' UTR sequence
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SCAF11
    OriGene shRNA RFP: SCAF11
    OriGene siRNA: SCAF11
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SCAF11
    Clone
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    GenScript: all cDNA clones in your preferred vector: SCAF11 (NM_004719)
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    Primer
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    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat SCAF11
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SCAF11
      Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SCAF11

    Additional cDNA sequence: 

    AF030234.1 AF147405.1 AK025132.1 AK026473.1 AK302999.1 AK314093.1 BC017465.2 BC017851.1 
    BC020736.1 BC033589.1 BC040951.2 Y11251.1 

    24/26 DOTS entries (see all 26):

    DT.95173064  DT.95173060  DT.65284593  DT.116441  DT.91730580  DT.430448  DT.450172  DT.100812159 
    DT.40206920  DT.75146962  DT.91852578  DT.121206503  DT.92441784  DT.75150621  DT.95147755  DT.100029012 
    DT.100812162  DT.102833132  DT.121206465  DT.121206470  DT.40200312  DT.95173063  DT.99951848  DT.75150575 

    24/460 AceView cDNA sequences (see all 460):

    BU608266 AI926706 AI819214 BM982963 BU192289 N69081 AI189561 AI829962 
    AI399648 AA921845 BU507196 AI990580 BG505078 AI500589 AA327581 AA971089 
    AF147405 AA347852 BM745644 CB242426 BX509670 AI344631 BQ213294 BM985003 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for SCAF11 (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^
    SP1:                                                                                                                                                            
    SP2:                    -                 -     -     -     -                                                                                                   
    SP3:                                      -     -     -     -                                                                                                   
    SP4:                    -                 -     -     -                                                                                                         
    SP5:                    -                 -     -                                                                                                               

    ExUns: 21
    SP1:      
    SP2:      
    SP3:      
    SP4:      
    SP5:      


    ECgene alternative splicing isoforms for SCAF11

    Expression
    for SCAF11 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SCAF11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AGATATTGTT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    SCAF11 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    AdiposeVisceral White AdiposeAdipose
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See SCAF11 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SCAF11

    SOURCE GeneReport for Unigene cluster: Hs.743951

    UniProtKB/Swiss-Prot: SCAFB_HUMAN, Q99590
    Tissue specificity: Widely expressed

        SABiosciences Expression via Pathway-Focused PCR Array including SCAF11: 
              Prostate Cancer in human mouse rat

    Primer
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    In Situ
    Assay Products:     
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    Orthologs
    for SCAF11 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of animals.

    Orthologs for SCAF11 gene from 5/18 species (see all 18)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves SCAF111 SR-related CTD-associated factor 11 65.14(n)
    54.3(a)    		   417805  NM_001195570.1  NP_001182499.1 
    lizard
    (Anolis carolinensis)    		 Reptilia SCAF116
    		 --
    		 50(a)
    		 1 ↔ 1
    		 5(53584197-53608628)
    tropical clawed frog
    (Xenopus tropicalis)    		 Amphibia Str.13202 Transcribed sequence with weak similarity to protein more 80.1(n)    142024020 
    zebrafish
    (Danio rerio)    		 Actinopterygii scaf111 SR-related CTD-associated factor 11 44.78(n)
    34.49(a)    		   566484  XM_689753.4  XP_694845.4 
    fruit fly
    (Drosophila melanogaster)    		 Insecta CG29266
    		 --
    		 8(a)
    		 1 → many
    		 3R(1405023-1414097)


    ENSEMBL Gene Tree for SCAF11 (if available)
    TreeFam Gene Tree for SCAF11 (if available) 

    Paralogs
    for SCAF11 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SCAF11 gene
    SCAF12  PHRF12  
    3 SIMAP similar genes for SCAF11 using alignment to 6 protein entries:     SCAFB_HUMAN (see all proteins):
    SFRS2IP    PHRF1    RNF181

    SCAF11 for paralogs           About GeneDecksing



    Genomic Variants
    for SCAF11 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1115 NCBI SNPs in SCAF11 are shown (see all 1115)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 12 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs2011100821,2
    		--46312497(+) AAAAG-/AAAAAA 1 -- ds50010--------
    rs1926501751,2
    		--46312577(+) GTCAAC/GTGAAA 1 -- ds50010--------
    rs1822502461,2
    		--46312704(+) TTTCTA/GATTTC 1 -- ds50010--------
    rs104922491,2
    		C,F,H,--46312816(+) AATGAC/TTGGTA 1 -- ds500119Minor allele frequency- T:0.01NS EA NA 1526
    rs1868984791,2
    		--46313055(+) TCTGAA/GGCTAC 1 -- ut310--------
    rs799019011,2
    		F,--46313187(+) GATAAC/GTACTA 1 -- ut311Minor allele frequency- G:0.03NA 120
    rs1477272151,2
    		--46313208(+) AATTCC/TAGGCA 1 -- ut310--------
    rs1916924291,2
    		--46313253(+) TTAACA/GGGACC 1 -- ut310--------
    rs1412290621,2
    		--46313411(+) CAACAC/TAAAGC 1 -- ut310--------
    rs1469681721,2
    		--46313420(+) GCATGC/TATTTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for SCAF11 (46312914 - 46385903 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for SCAF11: --

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    Disorders / Diseases
    for SCAF11 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    SCAF11 for disorders           About GeneDecksing

    OMIM gene information: 603668    OMIM disorders: --

    7 diseases for SCAF11:    About MalaCards
    renal carcinoma    carcinoma    renal cell carcinoma    behcet's disease
    alzheimer's disease    malaria    neuronitis


    Export disorders for SCAF11 gene to outside databases

    Publications
    for SCAF11 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SCAF11 gene, integrated from 9 sources (see all 30):
    (articles sorted by number of sources associating them with SCAF11)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Sip1, a novel RS domain-containing protein essential for pre-mRNA splicing. (PubMed id 9447963)1, 2, 3 Zhang W.J. and Wu J.Y. (1998)
    2. A novel SR-related protein specifically interacts with the carboxy- terminal domain (CTD) of RNA polymerase II through a conserved interaction domain. (PubMed id 9224939)1, 2, 3 Tanner S.... Bourquin J.-P. (1997)
    3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Antigens recognized by autologous antibody in patients with renal- cell carcinoma. (PubMed id 10508479)1, 2 Scanlan M.J....Old L.J. (1999)
    6. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    7. Functional proteomics establishes the interaction of S IRT7 with chromatin remodeling complexes and expands its role in regulation of R NA polymerase I transcription. (PubMed id 22586326)1 Tsai Y.C....Cristea I.M. (2012)
    8. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    9. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    10. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)

    External Searches for SCAF11 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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    Genome Databases showing SCAF11 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9169 HGNC: 10784 AceView: SFRS2IP Ensembl:ENSG00000139218 euGenes: HUgn9169
    ECgene: SCAF11 H-InvDB: SCAF11

    Other Databases showing SCAF11 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing SCAF11 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SCAF11 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for SCAF11 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for SCAF11 gene:
    Search GeneIP for patents involving SCAF11

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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