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Aliases for SCAANT1 Gene

Subcategory (RNA class) for SCAANT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SCAANT1 Gene

  • SCA7/ATXN7 Antisense RNA 1 2 3 5
  • Spinocerebellar Ataxia-7 Antisense Noncoding Transcript 1 2 3
  • SCA7/ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7-AS1 3

External Ids for SCAANT1 Gene

Previous GeneCards Identifiers for SCAANT1 Gene

  • GC03U901813

Summaries for SCAANT1 Gene

GeneCards Summary for SCAANT1 Gene

SCAANT1 (SCA7/ATXN7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAANT1 Gene

Genomics for SCAANT1 Gene

Regulatory Elements for SCAANT1 Gene

Enhancers for SCAANT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F063910 1 ENCODE 0.8 -0.9 -881 4.0 ATF1 ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 ZNF207 SP3 SP5 PSMD6-AS2 ATXN7 THOC7 THOC7-AS1 LOC100130345 SCAANT1
GH03F063921 1 Ensembl ENCODE 0.4 -10.7 -10711 1.8 HDGF CTCF PKNOX1 CHD4 BMI1 RAD21 ZNF121 EED ETV6 MTA2 SCAANT1 PSMD6-AS2
GH03F063936 1.1 Ensembl ENCODE 0.3 -26.8 -26797 4.3 HDGF PKNOX1 BMI1 YY1 GATA2 FOS ETV6 CEBPB JUNB TBX21 PSMD6-AS2 ATXN7 THOC7 THOC7-AS1 SCAANT1
GH03F063927 1 Ensembl ENCODE 0.3 -16.1 -16129 1.4 PKNOX1 SAP130 ZIC2 FOSL1 GLIS2 POLR2A SCRT2 EED CREM NFE2L2 ATXN7 SCAANT1 PSMD6-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCAANT1 on UCSC Golden Path with GeneCards custom track

Promoters for SCAANT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001366011 -728 2201 ARID4B SIN3A ZNF48 YY1 GLIS2 ZNF207 SP3 SP5 GLIS1 KDM1A

Genomic Location for SCAANT1 Gene

63,911,518 bp from pter
63,911,772 bp from pter
255 bases
Minus strand

Genomic View for SCAANT1 Gene

Genes around SCAANT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAANT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAANT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SCAANT1 Gene

Proteins for SCAANT1 Gene

Post-translational modifications for SCAANT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAANT1 Gene

Domains & Families for SCAANT1 Gene

Gene Families for SCAANT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCAANT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCAANT1 Gene

Function for SCAANT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAANT1 Gene

Localization for SCAANT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCAANT1 Gene

Pathways & Interactions for SCAANT1 Gene

SuperPathways for SCAANT1 Gene

No Data Available

Interacting Proteins for SCAANT1 Gene

Gene Ontology (GO) - Biological Process for SCAANT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SCAANT1 Gene

Transcripts for SCAANT1 Gene

mRNA/cDNA for SCAANT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAANT1 Gene

No ASD Table

Relevant External Links for SCAANT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SCAANT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAANT1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SCAANT1 Gene

Orthologs for SCAANT1 Gene

Evolution for SCAANT1 Gene

Gene Tree for SCAANT1 (if available)
Gene Tree for SCAANT1 (if available)

No data available for Orthologs for SCAANT1 Gene

Paralogs for SCAANT1 Gene

No data available for Paralogs for SCAANT1 Gene

Variants for SCAANT1 Gene

Relevant External Links for SCAANT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCAANT1 Gene

Disorders for SCAANT1 Gene

No disorders were found for SCAANT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCAANT1 Gene

Publications for SCAANT1 Gene

  1. CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA. (PMID: 21689595) Sopher B.L. … La Spada A.R. (Neuron 2011) 2 3 64

Products for SCAANT1 Gene

Sources for SCAANT1 Gene

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