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Aliases for SCAANT1 Gene

Subcategory (RNA class) for SCAANT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCAANT1 Gene

  • SCA7/ATXN7 Antisense RNA 1 2 3 5
  • Spinocerebellar Ataxia-7 Antisense Noncoding Transcript 1 2 3
  • SCA7/ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7-AS1 3

External Ids for SCAANT1 Gene

Previous GeneCards Identifiers for SCAANT1 Gene

  • GC03U901813

Summaries for SCAANT1 Gene

GeneCards Summary for SCAANT1 Gene

SCAANT1 (SCA7/ATXN7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAANT1 Gene

Genomics for SCAANT1 Gene

Regulatory Elements for SCAANT1 Gene

Enhancers for SCAANT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G063910 1.3 ENCODE dbSUPER 0.7 -0.9 -881 4.0 HNRNPUL1 FOXA2 ATF1 CREB3L1 ARID4B SIN3A ZNF2 ZNF48 YY1 GLIS2 PSMD6-AS2 THOC7 ATXN7 THOC7-AS1 LOC100130345 SCAANT1
GH03G063921 1.3 Ensembl ENCODE dbSUPER 0.4 -10.7 -10711 1.8 HDGF CTCF PKNOX1 BACH1 CHD4 BMI1 NFXL1 CEBPG RAD21 YY1 SCAANT1 PSMD6-AS2
GH03G063927 1.3 Ensembl ENCODE dbSUPER 0.4 -16.1 -16129 1.4 PKNOX1 SAP130 RBBP5 ZIC2 FOSL1 GLIS2 POLR2A EED SCRT2 IKZF2 ATXN7 SCAANT1 PSMD6-AS2
GH03G063937 1.3 Ensembl ENCODE dbSUPER 0.3 -26.2 -26173 1.5 CTCF PKNOX1 TFAP4 TAL1 NFXL1 CEBPG YY1 ZNF316 ZSCAN5C ZNF143 THOC7 ATXN7 THOC7-AS1 PSMD6-AS2 SCAANT1
GH03G063932 1.2 Ensembl ENCODE dbSUPER 0.3 -22.3 -22329 3.0 NFXL1 CEBPG ZFHX2 FOS ETV6 RELB IKZF2 ZNF263 MTA2 BHLHE40 ATXN7 THOC7 THOC7-AS1 PSMD6-AS2 SCAANT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SCAANT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SCAANT1 Gene

Chromosome:
3
Start:
63,911,518 bp from pter
End:
63,911,772 bp from pter
Size:
255 bases
Orientation:
Minus strand

Genomic View for SCAANT1 Gene

Genes around SCAANT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAANT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAANT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SCAANT1 Gene

Proteins for SCAANT1 Gene

Post-translational modifications for SCAANT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAANT1 Gene

Domains & Families for SCAANT1 Gene

Gene Families for SCAANT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCAANT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCAANT1 Gene

Function for SCAANT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAANT1 Gene

Localization for SCAANT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SCAANT1 Gene

Pathways & Interactions for SCAANT1 Gene

SuperPathways for SCAANT1 Gene

No Data Available

Interacting Proteins for SCAANT1 Gene

Gene Ontology (GO) - Biological Process for SCAANT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCAANT1 Gene

Drugs & Compounds for SCAANT1 Gene

No Compound Related Data Available

Transcripts for SCAANT1 Gene

mRNA/cDNA for SCAANT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SCAANT1 Gene

No ASD Table

Relevant External Links for SCAANT1 Gene

GeneLoc Exon Structure for
SCAANT1
ECgene alternative splicing isoforms for
SCAANT1

Expression for SCAANT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAANT1 Gene:

SCAANT1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAANT1 Gene

Orthologs for SCAANT1 Gene

Evolution for SCAANT1 Gene

ENSEMBL:
Gene Tree for SCAANT1 (if available)
TreeFam:
Gene Tree for SCAANT1 (if available)

No data available for Orthologs for SCAANT1 Gene

Paralogs for SCAANT1 Gene

No data available for Paralogs for SCAANT1 Gene

Variants for SCAANT1 Gene

Relevant External Links for SCAANT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAANT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCAANT1 Gene

Disorders for SCAANT1 Gene

No disorders were found for SCAANT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SCAANT1 Gene

Publications for SCAANT1 Gene

  1. CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA. (PMID: 21689595) Sopher B.L. … La Spada A.R. (Neuron 2011) 2 3 64

Products for SCAANT1 Gene

Sources for SCAANT1 Gene

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