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Aliases for SCAANT1 Gene

Subcategory (RNA class) for SCAANT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SCAANT1 Gene

  • SCA7/ATXN7 Antisense RNA 1 2 3 5
  • Spinocerebellar Ataxia-7 Antisense Noncoding Transcript 1 2 3
  • SCA7/ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ATXN7-AS1 3

External Ids for SCAANT1 Gene

Previous GeneCards Identifiers for SCAANT1 Gene

  • GC03U901813

Summaries for SCAANT1 Gene

GeneCards Summary for SCAANT1 Gene

SCAANT1 (SCA7/ATXN7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SCAANT1 include Spinocerebellar Ataxia 7.

Additional gene information for SCAANT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SCAANT1 Gene

Genomics for SCAANT1 Gene

GeneHancer (GH) Regulatory Elements for SCAANT1 Gene

Promoters and enhancers for SCAANT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I063910 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 550.8 -0.9 -881 4 ATF1 FOXA2 ARID4B SIN3A ZNF48 ETS1 YY1 GLIS2 ZNF207 ZNF143 SCAANT1 PSMD6-AS2 ATXN7 THOC7 THOC7-AS1 LOC100130345 ADAMTS9-AS2
GH03I063921 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.7 -10710 1.8 HDGF RB1 BACH1 CHD4 PAX8 EBF1 BMI1 CEBPG BATF IRF4 SCAANT1 ATXN7 PSMD6-AS2
GH03I063966 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.2 -58.1 -58124 7.6 PKNOX1 FOXA2 ARID4B DMAP1 ZNF2 ZNF48 YY1 ZNF766 ZNF143 ATF7 ATXN7 PSMD6-AS2 THOC7-AS1 THOC7 SCAANT1
GH03I063927 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -16.1 -16129 1.4 PKNOX1 IKZF1 TRIM22 NBN ATF7 DPF2 IKZF2 SPI1 ATXN7 SCAANT1 PSMD6-AS2
GH03I063937 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -26.2 -26172 1.5 PKNOX1 TFAP4 FOXA2 CEBPG POLR2A ZSCAN5C ZNF143 ATF7 RCOR1 IKZF2 ATXN7 THOC7 THOC7-AS1 PSMD6-AS2 SCAANT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SCAANT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SCAANT1 Gene

Genomic Locations for SCAANT1 Gene
chr3:63,911,518-63,911,772
(GRCh38/hg38)
Size:
255 bases
Orientation:
Minus strand

Genomic View for SCAANT1 Gene

Genes around SCAANT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SCAANT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SCAANT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SCAANT1 Gene

Proteins for SCAANT1 Gene

Post-translational modifications for SCAANT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SCAANT1 Gene

Domains & Families for SCAANT1 Gene

Gene Families for SCAANT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SCAANT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SCAANT1 Gene

Function for SCAANT1 Gene

Phenotypes From GWAS Catalog for SCAANT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SCAANT1 Gene

Localization for SCAANT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SCAANT1 Gene

Pathways & Interactions for SCAANT1 Gene

SuperPathways for SCAANT1 Gene

No Data Available

Interacting Proteins for SCAANT1 Gene

Gene Ontology (GO) - Biological Process for SCAANT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SCAANT1 Gene

Drugs & Compounds for SCAANT1 Gene

No Compound Related Data Available

Transcripts for SCAANT1 Gene

mRNA/cDNA for SCAANT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SCAANT1 Gene

No ASD Table

Relevant External Links for SCAANT1 Gene

GeneLoc Exon Structure for
SCAANT1
ECgene alternative splicing isoforms for
SCAANT1

Expression for SCAANT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SCAANT1 Gene:

SCAANT1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SCAANT1 Gene

Orthologs for SCAANT1 Gene

Evolution for SCAANT1 Gene

ENSEMBL:
Gene Tree for SCAANT1 (if available)
TreeFam:
Gene Tree for SCAANT1 (if available)

No data available for Orthologs for SCAANT1 Gene

Paralogs for SCAANT1 Gene

No data available for Paralogs for SCAANT1 Gene

Variants for SCAANT1 Gene

Additional Variant Information for SCAANT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SCAANT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SCAANT1 Gene

Disorders for SCAANT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SCAANT1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
spinocerebellar ataxia 7
  • sca7
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SCAANT1

genes like me logo Genes that share disorders with SCAANT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SCAANT1 Gene

Publications for SCAANT1 Gene

  1. CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA. (PMID: 21689595) Sopher BL … La Spada AR (Neuron 2011) 2 3 58
  2. The Long Non-Coding RNAs in Neurodegenerative Diseases: Novel Mechanisms of Pathogenesis. (PMID: 27338628) Riva P … Venturin M (Current Alzheimer research 2016) 3 58

Products for SCAANT1 Gene

Sources for SCAANT1 Gene

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