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Aliases for SC5D Gene

Aliases for SC5D Gene

  • Sterol-C5-Desaturase 2 3 4 5
  • Sterol-C5-Desaturase (ERG3 Delta-5-Desaturase Homolog, S. Cerevisiae)-Like 2 3
  • Delta(7)-Sterol C5(6)-Desaturase 3 4
  • Delta(7)-Sterol 5-Desaturase 3 4
  • Lathosterol 5-Desaturase 3 4
  • C-5 Sterol Desaturase 3 4
  • SC5DL 3 4
  • Sterol-C5-Desaturase (ERG3 Delta-5-Desaturase Homolog, Fungal)-Like 2
  • Sterol-C5-Desaturase (Fungal ERG3, Delta-5-Desaturase)-Like 2
  • 3beta-Hydroxysteroid-Delta5-Desaturase 3
  • Fungal ERG3, Delta-5-Desaturase-Like 3
  • Lathosterol Dehydrogenase 3
  • Lathosterol Oxidase 2
  • EC 1.14.19.20 4
  • S5DES 3
  • ERG3 3

External Ids for SC5D Gene

Previous HGNC Symbols for SC5D Gene

  • SC5DL

Previous GeneCards Identifiers for SC5D Gene

  • GC11P121163

Summaries for SC5D Gene

Entrez Gene Summary for SC5D Gene

  • This gene encodes an enzyme of cholesterol biosynthesis. The encoded protein catalyzes the conversion of lathosterol into 7-dehydrocholesterol. Mutations in this gene have been associated with lathosterolosis. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for SC5D Gene

SC5D (Sterol-C5-Desaturase) is a Protein Coding gene. Diseases associated with SC5D include lathosterolosis and mevalonic aciduria. Among its related pathways are Metabolism and Regulation of cholesterol biosynthesis by SREBP (SREBF). GO annotations related to this gene include oxidoreductase activity and C-5 sterol desaturase activity.

UniProtKB/Swiss-Prot for SC5D Gene

  • Catalyzes a dehydrogenation to introduce C5-6 double bond into lathosterol.

Gene Wiki entry for SC5D Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SC5D Gene

Genomics for SC5D Gene

Regulatory Elements for SC5D Gene

Promoters for SC5D Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SC5D on UCSC Golden Path with GeneCards custom track

Genomic Location for SC5D Gene

Chromosome:
11
Start:
121,292,453 bp from pter
End:
121,313,410 bp from pter
Size:
20,958 bases
Orientation:
Plus strand

Genomic View for SC5D Gene

Genes around SC5D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SC5D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SC5D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SC5D Gene

Proteins for SC5D Gene

  • Protein details for SC5D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75845-SC5D_HUMAN
    Recommended name:
    Lathosterol oxidase
    Protein Accession:
    O75845
    Secondary Accessions:
    • O00119
    • Q6GTM5
    • Q9UK15

    Protein attributes for SC5D Gene

    Size:
    299 amino acids
    Molecular mass:
    35301 Da
    Cofactor:
    Name=Fe cation; Xref=ChEBI:CHEBI:24875;
    Quaternary structure:
    No Data Available

neXtProt entry for SC5D Gene

Proteomics data for SC5D Gene at MOPED

Post-translational modifications for SC5D Gene

  • Ubiquitination at Lys 255, Lys 263, and Lys 297
  • Modification sites at PhosphoSitePlus

Other Protein References for SC5D Gene

No data available for DME Specific Peptides for SC5D Gene

Domains & Families for SC5D Gene

Gene Families for SC5D Gene

Protein Domains for SC5D Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

O75845

UniProtKB/Swiss-Prot:

SC5D_HUMAN :
  • The histidine box domains may contain the active site and/or be involved in metal ion binding.
  • Belongs to the sterol desaturase family.
Domain:
  • The histidine box domains may contain the active site and/or be involved in metal ion binding.
Family:
  • Belongs to the sterol desaturase family.
genes like me logo Genes that share domains with SC5D: view

Function for SC5D Gene

Molecular function for SC5D Gene

UniProtKB/Swiss-Prot CatalyticActivity:
A Delta(7)-sterol + 2 ferrocytochrome b5 + O(2) + 2 H(+) = a Delta(5,7)-sterol + 2 ferricytochrome b5 + 2 H(2)O.
UniProtKB/Swiss-Prot Function:
Catalyzes a dehydrogenation to introduce C5-6 double bond into lathosterol.

Enzyme Numbers (IUBMB) for SC5D Gene

genes like me logo Genes that share phenotypes with SC5D: view

Human Phenotype Ontology for SC5D Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for SC5D Gene

MGI Knock Outs for SC5D:

Animal Model Products

No data available for Gene Ontology (GO) - Molecular Function , Transcription Factor Targets and HOMER Transcription for SC5D Gene

Localization for SC5D Gene

Subcellular locations from UniProtKB/Swiss-Prot for SC5D Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SC5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SC5D: view

No data available for Subcellular locations from COMPARTMENTS for SC5D Gene

Pathways & Interactions for SC5D Gene

genes like me logo Genes that share pathways with SC5D: view

Gene Ontology (GO) - Biological Process for SC5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process TAS 8976377
GO:0033489 cholesterol biosynthetic process via desmosterol TAS --
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with SC5D: view

No data available for SIGNOR curated interactions for SC5D Gene

Drugs & Compounds for SC5D Gene

(5) Drugs for SC5D Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Flavin Mononucleotide Experimental Pharma 6
NAD Pharma Full agonist, Agonist 0
NADH Nutra 0

(16) Additional Compounds for SC5D Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
7-dehydrocholesterol
  • (-)-7-dehydrocholesterol
  • (3b)-Cholesta-5,7-dien-3-ol
  • (3beta)-Cholesta-5,7-dien-3-ol
  • 10,13-Dimethyl-17-(6-methylheptan-2-yl)-2,3,4,9,11,12,14,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-ol
  • 17-(1,5-Dimethylhexyl)-10,13-dimethyl-2,3,4,9,10,11,12,13,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-3-ol
434-16-2
lathosterol
  • (3beta)-Cholest-7-en-3-ol
  • (3beta,5alpha)-Cholest-7-en-3-ol
  • (3beta,alpha)-Cholest-7-en-3-ol
  • (7)-Cholestenol
  • 3b-Hydroxy-5-cholestene
80-99-9
5,7,24(28)-Ergostatrienol
5-Dehydroavenasterol
5-Dehydroepisterol
  • Campesta-7,24(28)-dien-3beta-ol
  • Ergosta-5,7,24(28)-trien-3beta-ol
23582-83-4
genes like me logo Genes that share compounds with SC5D: view

Transcripts for SC5D Gene

Unigene Clusters for SC5D Gene

Sterol-C5-desaturase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SC5D Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b
SP1: -
SP2: - -
SP3:

Relevant External Links for SC5D Gene

GeneLoc Exon Structure for
SC5D
ECgene alternative splicing isoforms for
SC5D

Expression for SC5D Gene

mRNA expression in normal human tissues for SC5D Gene

mRNA differential expression in normal tissues according to GTEx for SC5D Gene

This gene is overexpressed in Liver (x5.5).

Protein differential expression in normal tissues from HIPED for SC5D Gene

This gene is overexpressed in Fetal testis (28.0), Gallbladder (13.1), and Adrenal (9.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SC5D Gene



SOURCE GeneReport for Unigene cluster for SC5D Gene Hs.287749

genes like me logo Genes that share expression patterns with SC5D: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SC5D Gene

Orthologs for SC5D Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SC5D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SC5D 36
  • 98 (a)
OneToOne
SC5DL 35
  • 99.22 (n)
  • 98.33 (a)
cow
(Bos Taurus)
Mammalia SC5DL 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SC5D 36
  • 75 (a)
OneToOne
SC5D 35
  • 88.07 (n)
  • 87.29 (a)
mouse
(Mus musculus)
Mammalia Sc5d 16
Sc5d 36
  • 84 (a)
OneToOne
Sc5d 35
  • 80.82 (n)
  • 83.61 (a)
oppossum
(Monodelphis domestica)
Mammalia SC5D 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SC5D 36
  • 75 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sc5d 35
  • 79.93 (n)
  • 82.27 (a)
chicken
(Gallus gallus)
Aves SC5DL 35
  • 64.47 (n)
  • 67.71 (a)
SC5D 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SC5D 36
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100490845 35
  • 68.05 (n)
  • 67.59 (a)
zebrafish
(Danio rerio)
Actinopterygii sc5d 36
  • 67 (a)
OneToOne
sc5d 35
  • 66.22 (n)
  • 67.89 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR151C 35
  • 50.83 (n)
  • 50.83 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ERG3 35
  • 52.54 (n)
  • 47.21 (a)
ERG3 36
  • 37 (a)
OneToOne
ERG3 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F08855g 35
  • 54.1 (n)
  • 49.18 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G02590 35
  • 53.22 (n)
  • 38.12 (a)
rice
(Oryza sativa)
Liliopsida Os01g0134500 35
  • 46.25 (n)
  • 29.17 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU06207 35
  • 53.85 (n)
  • 50.92 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes erg31 35
  • 55.6 (n)
  • 54.15 (a)
Species with no ortholog for SC5D:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SC5D Gene

ENSEMBL:
Gene Tree for SC5D (if available)
TreeFam:
Gene Tree for SC5D (if available)

Paralogs for SC5D Gene

No data available for Paralogs for SC5D Gene

Variants for SC5D Gene

Sequence variations from dbSNP and Humsavar for SC5D Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
VAR_014423 Lathosterolosis (LATHST)
VAR_014424 Lathosterolosis (LATHST)
VAR_020829 Lathosterolosis (LATHST)
rs751417 -- 121,293,731(-) ATTTA(C/T)TAGGT intron-variant
rs1801852 -- 121,308,276(+) AGTAA(A/G)AATAT utr-variant-3-prime

Variation tolerance for SC5D Gene

Residual Variation Intolerance Score: 37.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.54; 11.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SC5D Gene

HapMap Linkage Disequilibrium report
SC5D
Human Gene Mutation Database (HGMD)
SC5D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SC5D Gene

Disorders for SC5D Gene

MalaCards: The human disease database

(4) MalaCards diseases for SC5D Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
lathosterolosis
  • sc5d deficiency
mevalonic aciduria
  • mevalonate kinase deficiency
congenital ichthyosiform erythroderma
  • alligator skin
acid-labile subunit, deficiency of
  • acid-labile subunit deficiency
- elite association - COSMIC cancer census association via MalaCards
Search SC5D in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

SC5D_HUMAN
  • Lathosterolosis (LATHST) [MIM:607330]: Autosomal recessive disorder characterized by a complex phenotype, including multiple congenital anomalies, mental retardation, and liver disease. {ECO:0000269 PubMed:12189593, ECO:0000269 PubMed:12812989}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for SC5D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SC5D
genes like me logo Genes that share disorders with SC5D: view

No data available for Genatlas for SC5D Gene

Publications for SC5D Gene

  1. Molecular cloning and mapping of a human cDNA(SC5DL) encoding a protein homologous to fungal sterol-C5-desaturase. (PMID: 8976377) Matsushima M. … Nakamura Y. (Cytogenet. Cell Genet. 1996) 2 3 4 23 67
  2. Molecular cloning and structural analysis of human sterol C5 desaturase. (PMID: 11731337) Sugawara T. … Ishibashi T. (Biochim. Biophys. Acta 2001) 3 23 26
  3. Lathosterolosis: an inborn error of human and murine cholesterol synthesis due to lathosterol 5-desaturase deficiency. (PMID: 12812989) Krakowiak P.A. … Porter F.D. (Hum. Mol. Genet. 2003) 3 23
  4. Lathosterolosis, a novel multiple-malformation/mental retardation syndrome due to deficiency of 3beta-hydroxysteroid-delta5- desaturase. (PMID: 12189593) Brunetti-Pierri N. … Parenti G. (Am. J. Hum. Genet. 2002) 3 23
  5. cDNA cloning of the mammalian sterol C5-desaturase and the expression in yeast mutant. (PMID: 10786622) Nishi S. … Ishibashi T. (Biochim. Biophys. Acta 2000) 3 23

Products for SC5D Gene

Sources for SC5D Gene

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