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Aliases for SBSPON Gene

Aliases for SBSPON Gene

  • Somatomedin B And Thrombospondin, Type 1 Domain Containing 2 3
  • RPE Spondin 2 3
  • RPE-Spondin 3 4
  • C8orf84 3 4
  • RPESP 3 4
  • Chromosome 8 Open Reading Frame 84 2
  • Rpe-Spondin 2

External Ids for SBSPON Gene

Previous HGNC Symbols for SBSPON Gene

  • C8orf84

Previous GeneCards Identifiers for SBSPON Gene

  • GC08M073977

Summaries for SBSPON Gene

GeneCards Summary for SBSPON Gene

SBSPON (Somatomedin B And Thrombospondin, Type 1 Domain Containing) is a Protein Coding gene. Among its related pathways are Transport to the Golgi and subsequent modification and O-linked glycosylation. GO annotations related to this gene include scavenger receptor activity and polysaccharide binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SBSPON Gene

Genomics for SBSPON Gene

Genomic Location for SBSPON Gene

Chromosome:
8
Start:
73,064,540 bp from pter
End:
73,124,088 bp from pter
Size:
59,549 bases
Orientation:
Minus strand

Genomic View for SBSPON Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SBSPON Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SBSPON Gene

No data available for Regulatory Elements for SBSPON Gene

Proteins for SBSPON Gene

  • Protein details for SBSPON Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVN8-SBSPO_HUMAN
    Recommended name:
    Somatomedin-B and thrombospondin type-1 domain-containing protein
    Protein Accession:
    Q8IVN8
    Secondary Accessions:
    • A8KAA5
    • Q96J64

    Protein attributes for SBSPON Gene

    Size:
    264 amino acids
    Molecular mass:
    29610 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH42877.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAK83466.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAF85659.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SBSPON Gene

Proteomics data for SBSPON Gene at MOPED

Post-translational modifications for SBSPON Gene

  • Glycosylation at Asn 227
  • Modification sites at PhosphoSitePlus

Other Protein References for SBSPON Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SBSPON Gene

Domains & Families for SBSPON Gene

Protein Domains for SBSPON Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SBSPON Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IVN8

UniProtKB/Swiss-Prot:

SBSPO_HUMAN :
  • Contains 1 SMB (somatomedin-B) domain.
  • Belongs to the thrombospondin family.
Domain:
  • Contains 1 SMB (somatomedin-B) domain.
  • Contains 1 TSP type-1 domain.
Family:
  • Belongs to the thrombospondin family.
genes like me logo Genes that share domains with SBSPON: view

No data available for Gene Families for SBSPON Gene

Function for SBSPON Gene

Gene Ontology (GO) - Molecular Function for SBSPON Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005044 scavenger receptor activity IEA --
GO:0030247 polysaccharide binding IEA --
genes like me logo Genes that share ontologies with SBSPON: view
genes like me logo Genes that share phenotypes with SBSPON: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SBSPON

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SBSPON Gene

Localization for SBSPON Gene

Subcellular locations from UniProtKB/Swiss-Prot for SBSPON Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SBSPON Gene COMPARTMENTS Subcellular localization image for SBSPON gene
Compartment Confidence
extracellular 3

Gene Ontology (GO) - Cellular Components for SBSPON Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0031012 colocalizes_with extracellular matrix IDA 20551380
genes like me logo Genes that share ontologies with SBSPON: view

Pathways & Interactions for SBSPON Gene

genes like me logo Genes that share pathways with SBSPON: view

Interacting Proteins for SBSPON Gene

Gene Ontology (GO) - Biological Process for SBSPON Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006898 receptor-mediated endocytosis IEA --
GO:0006955 immune response IEA --
genes like me logo Genes that share ontologies with SBSPON: view

No data available for SIGNOR curated interactions for SBSPON Gene

Drugs & Compounds for SBSPON Gene

No Compound Related Data Available

Transcripts for SBSPON Gene

mRNA/cDNA for SBSPON Gene

Unigene Clusters for SBSPON Gene

Somatomedin B and thrombospondin, type 1 domain containing:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SBSPON

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SBSPON Gene

No ASD Table

Relevant External Links for SBSPON Gene

GeneLoc Exon Structure for
SBSPON
ECgene alternative splicing isoforms for
SBSPON

Expression for SBSPON Gene

mRNA expression in normal human tissues for SBSPON Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SBSPON Gene

This gene is overexpressed in Nerve - Tibial (x6.6), Artery - Coronary (x4.8), Artery - Tibial (x4.5), and Esophagus - Gastroesophageal Junction (x4.2).

Protein differential expression in normal tissues from HIPED for SBSPON Gene

This gene is overexpressed in Urinary Bladder (11.1), Prostate (9.0), Spinal cord (8.5), and Colon (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SBSPON Gene



SOURCE GeneReport for Unigene cluster for SBSPON Gene Hs.439040

mRNA Expression by UniProt/SwissProt for SBSPON Gene

Q8IVN8-SBSPO_HUMAN
Tissue specificity: Detected in aorta extracellular matrix (at protein level).
genes like me logo Genes that share expression patterns with SBSPON: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for Protein tissue co-expression partners for SBSPON Gene

Orthologs for SBSPON Gene

This gene was present in the common ancestor of animals.

Orthologs for SBSPON Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SBSPON 36
  • 98 (a)
OneToOne
SBSPON 35
  • 99.12 (n)
  • 98.48 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia SBSPON 36
  • 57 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sbspon 36
  • 89 (a)
OneToOne
Sbspon 16
Sbspon 35
  • 87.63 (n)
  • 89.39 (a)
oppossum
(Monodelphis domestica)
Mammalia SBSPON 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SBSPON 36
  • 89 (a)
OneToOne
SBSPON 35
  • 89.52 (n)
  • 89.39 (a)
cow
(Bos Taurus)
Mammalia SBSPON 36
  • 91 (a)
OneToOne
SBSPON 35
  • 89.39 (n)
  • 90.53 (a)
rat
(Rattus norvegicus)
Mammalia Sbspon 35
  • 85.73 (n)
  • 89.02 (a)
chicken
(Gallus gallus)
Aves SBSPON 36
  • 63 (a)
OneToOne
C2H8ORF84 35
  • 70.83 (n)
  • 65.62 (a)
lizard
(Anolis carolinensis)
Reptilia SBSPON 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sbspon 35
  • 65.64 (n)
  • 63.85 (a)
zebrafish
(Danio rerio)
Actinopterygii SBSPON 36
  • 46 (a)
OneToOne
LOC100151218 35
  • 62.23 (n)
  • 60.52 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG42339 36
  • 19 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea R17.3 36
  • 15 (a)
OneToOne
CELE_R17.3 35
  • 42.74 (n)
  • 32.26 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.275 36
  • 21 (a)
OneToOne
Species with no ortholog for SBSPON:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SBSPON Gene

ENSEMBL:
Gene Tree for SBSPON (if available)
TreeFam:
Gene Tree for SBSPON (if available)

Paralogs for SBSPON Gene

Pseudogenes.org Pseudogenes for SBSPON Gene

genes like me logo Genes that share paralogs with SBSPON: view

No data available for Paralogs for SBSPON Gene

Variants for SBSPON Gene

Sequence variations from dbSNP and Humsavar for SBSPON Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs731318 -- 73,072,293(-) TTTGT(C/T)TCCTT intron-variant
rs731319 -- 73,072,166(-) TCTGA(C/G/T)CCCCA intron-variant
rs1007750 -- 73,074,057(+) ATTTA(A/C)TTCTC intron-variant
rs1047410 -- 73,066,873(-) TTAAT(A/G)TTCCA utr-variant-3-prime
rs1047411 -- 73,066,626(-) AAACA(A/G)TTGCT utr-variant-3-prime

Variation tolerance for SBSPON Gene

Residual Variation Intolerance Score: 73.38% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.36; 92.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SBSPON Gene

HapMap Linkage Disequilibrium report
SBSPON

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SBSPON Gene

Disorders for SBSPON Gene

Relevant External Links for SBSPON

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SBSPON
genes like me logo Genes that share disorders with SBSPON: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SBSPON Gene

Publications for SBSPON Gene

  1. Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization. (PMID: 15218245) Schulz H.L. … Weber B.H.F. (Cytogenet. Genome Res. 2004) 23 67
  2. Expressed sequence tag analysis of human RPE/choroid for the NEIBank project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G. … Peterson K. (Mol. Vis. 2002) 2 67
  3. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny E.E. … Peter I. (PLoS Genet. 2012) 67
  4. Genetic variants near PDGFRA are associated with corneal curvature in Australians. (PMID: 22969067) Mishra A. … Mackey D.A. (Invest. Ophthalmol. Vis. Sci. 2012) 67
  5. Proteomics characterization of extracellular space components in the human aorta. (PMID: 20551380) Didangelos A. … Mayr M. (Mol. Cell. Proteomics 2010) 67

Products for SBSPON Gene

Sources for SBSPON Gene

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